View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_low_22 (Length: 371)

Name: NF16668_low_22
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_low_22
NF16668_low_22
[»] chr2 (5 HSPs)
chr2 (17-364)||(10528596-10528943)
chr2 (144-362)||(10535472-10535684)
chr2 (56-151)||(10535866-10535960)
chr2 (49-130)||(33146085-33146166)
chr2 (48-124)||(14335656-14335732)
[»] chr3 (2 HSPs)
chr3 (148-364)||(34370372-34370580)
chr3 (49-129)||(27394304-27394384)
[»] chr6 (3 HSPs)
chr6 (275-366)||(24471829-24471920)
chr6 (272-366)||(24467529-24467623)
chr6 (49-130)||(21802547-21802628)
[»] chr8 (1 HSPs)
chr8 (49-124)||(17564721-17564796)
[»] chr7 (5 HSPs)
chr7 (49-124)||(3391808-3391883)
chr7 (49-130)||(16425952-16426033)
chr7 (49-90)||(20261564-20261605)
chr7 (49-102)||(33576662-33576715)
chr7 (49-130)||(42813073-42813154)
[»] chr5 (1 HSPs)
chr5 (49-124)||(141567-141642)
[»] chr1 (2 HSPs)
chr1 (49-123)||(36604777-36604851)
chr1 (49-122)||(16536422-16536495)
[»] scaffold0068 (1 HSPs)
scaffold0068 (49-130)||(59311-59392)
[»] scaffold0003 (2 HSPs)
scaffold0003 (49-130)||(14665-14746)
scaffold0003 (49-130)||(28811-28892)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 10528943 - 10528596
Alignment:
Q  17 aagagaagttgaaattacaatcacatcactctttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10528943 aagagaagttgaaattacaatcacatcactctttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgct 10528844  T
Q  117 tgaattacgacccctctgctttaatctactttaatcaatacaccattgtcttgcgatgacgaagaagaagaggaagaagaaattatgatgatgggtggta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10528843 tgaattacgacccctctgctttaatctactttaatcaatacaccattgtcttgcgatgacgaagaagaagaagaagaagaaattatgatgatgggtggta 10528744  T
Q  217 catgcatggtgatgttagaagaagaactcattcacaaaactcgcttgtcttactatggtatttgtttctctttccctcttgcgatttcacttttttgttt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  10528743 catgcatggtgatgttagaagaagaactcattcacaaaactcgcttgtcttactatagtatttgtttctctctccctcttgcgatttcacttttttgttt 10528644  T
Q  317 ccatcttccctttgagcttgaatcatggcttttcttattcctatgctt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10528643 ccatcttccctttgagcttgaatcatggcttttcttattcctatgctt 10528596  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 144 - 362
Target Start/End: Complemental strand, 10535684 - 10535472
Alignment:
Q  144 actttaatcaatacaccattgtcttgcgatgacgaagaagaagaggaagaagaaattatgatgatgggtggtacatgcatggtgatgttagaagaagaac 243  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||      |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  10535684 actttaatcaatacaccattgtcttgcaatgataaagaagaaga------agaaattatgatgatgggtggtgcatgcatggtgatgtcagaagaagaac 10535591  T
Q  244 tcattcacaaaactcgcttgtcttactatggtatttgtttctctttccctcttgcgatttcacttttttgtttccatcttccctttgagcttgaatcatg 343  Q
    ||||||||||| ||||||||||||||| |||||||||||| | | |||||||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  10535590 tcattcacaaatctcgcttgtcttactctggtatttgtttttatctccctcttgctacttcacttttttgtttccaccttccctttgagcttgaatcatg 10535491  T
Q  344 gcttttcttattcctatgc 362  Q
    |||||||||| ||||||||    
T  10535490 gcttttcttaatcctatgc 10535472  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 10535960 - 10535866
Alignment:
Q  56 aaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccctctgctttaatctactttaat 151  Q
    ||||||||||||||| ||  |||||||||||| | |||| ||  ||| |||||||||||||||||||||||||| |   |||||||||||||||||    
T  10535960 aaaatatacactcccttcc-ttgaaaagtaaaatatttatgcctctcccctatggaatgcttgaattacgacccttacactttaatctactttaat 10535866  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 33146085 - 33146166
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 130  Q
    |||||| ||||||||||||||||||  |||||||| ||| ||| ||| | |||| |||||   ||||||||||||| |||||    
T  33146085 ttatgttaaaatatacactcccctcccttgaaaaggaaaatttatacccccctcccctataagatgcttgaattacaacccc 33146166  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 14335732 - 14335656
Alignment:
Q  48 tttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattac 124  Q
    ||||||| ||||||||||||| | |   |||||||||||| ||| ||| ||| ||||||||  ||||||||||||||    
T  14335732 tttatgttaaaatatacactctcattccttgaaaagtaaaatttatactctcatctcctattaaatgcttgaattac 14335656  T

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Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 148 - 364
Target Start/End: Original strand, 34370372 - 34370580
Alignment:
Q  148 taatcaatacaccattgtcttgcgatgacgaagaagaagaggaagaagaaattatgatgatgggtggtacatgcatggtgatgttagaagaagaactcat 247  Q
    ||||||||||||||||||||| |||||| |||||||||        |||| ||||||||||||||| | |||| | |||||||| |||||||||||||||    
T  34370372 taatcaatacaccattgtcttccgatgaagaagaagaa--------agaa-ttatgatgatgggtgctgcatgtacggtgatgtcagaagaagaactcat 34370462  T
Q  248 tcacaaaactcgcttgtcttactatggtatttgtttctctttccctcttgcgatttcac-ttttttgtttccatcttccctttgagcttgaatcatggct 346  Q
    ||||||| |||||||||||| || |||||||||||| ||| |||||||||| | ||||| ||||||||||||||||||||||||||||||||  ||||||    
T  34370463 tcacaaatctcgcttgtcttgctctggtatttgtttttctctccctcttgctacttcactttttttgtttccatcttccctttgagcttgaaatatggct 34370562  T
Q  347 tttcttattcctatgctt 364  Q
    |||||||| |||||||||    
T  34370563 tttcttatccctatgctt 34370580  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 27394304 - 27394384
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgaccc 129  Q
    |||||| |||||||||| |||||||  || ||||||||| ||| ||| |||||||| |||   ||||||||||||| ||||    
T  27394304 ttatgttaaaatatacattcccctcccttaaaaagtaaaatttatactctcctctcttataagatgcttgaattacaaccc 27394384  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 24471829 - 24471920
Alignment:
Q  275 tatttgtttctctttccctcttgcgatttcacttttttgtttccatcttccctttgagcttgaatcatggcttttcttattcctatgcttct 366  Q
    ||||||||| ||| |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  24471829 tatttgtttttctctccctcttgttacttcacttttttgtttccatcttccctttgagcttgaatcatggcttttcttatttccatgcttct 24471920  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 366
Target Start/End: Original strand, 24467529 - 24467623
Alignment:
Q  272 tggtatttgtttctctttccctcttgcgatttcacttttttgtttccatcttccctttgagcttgaatcatggcttttcttattcctatgcttct 366  Q
    |||||||||||| ||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  24467529 tggtatttgtttttctctccctcttgctacttcacttttttatttccatcttccctttgagcttgaatcatggctttttttatttccatgcttct 24467623  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 21802628 - 21802547
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 130  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||| | ||||  ||||   ||||||||||||| |||||    
T  21802628 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaacccc 21802547  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 17564721 - 17564796
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattac 124  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||| | |||| |||||   |||||||||||||    
T  17564721 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcccctataagatgcttgaattac 17564796  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 3391808 - 3391883
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattac 124  Q
    |||||| ||||||||||||||||||  || ||||||||| ||| ||| | |||| ||||||  |||||||||||||    
T  3391808 ttatgttaaaatatacactcccctcccttaaaaagtaaaatttatactcccctcccctatgagatgcttgaattac 3391883  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 16426033 - 16425952
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 130  Q
    |||||| ||||||||||||||||||  |||||||||||  ||| ||| | |||| ||||||  ||||||||| ||| |||||    
T  16426033 ttatgttaaaatatacactcccctcccttgaaaagtaatatttatactcccctcccctatgagatgcttgaaatacaacccc 16425952  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 20261605 - 20261564
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattt 90  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  20261605 ttatgttaaaatatacactcccctcccttgaaaagtaaattt 20261564  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 33576715 - 33576662
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctc 102  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||| ||||||    
T  33576715 ttatgttaaaatatacactcccctcttttgaaaagtaaaatttatactctcctc 33576662  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 42813073 - 42813154
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 130  Q
    |||||| ||||||||||| | |||| ||||||||||||| ||| ||| | |||| |||||   ||||||||||||| |||||    
T  42813073 ttatgttaaaatatacacactcctccgttgaaaagtaaaatttatactcccctcccctataagatgcttgaattacaacccc 42813154  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 141642 - 141567
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattac 124  Q
    |||||| |||||||||| |||||||  |||||||||||| ||| ||| | |||| ||||||  |||||||||||||    
T  141642 ttatgttaaaatatacaatcccctcctttgaaaagtaaaatttatactcccctcccctatgagatgcttgaattac 141567  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 36604777 - 36604851
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaatta 123  Q
    |||||| |||||||||||| |||||  |||||||||||| ||| ||| |||||| |||||   ||||||||||||    
T  36604777 ttatgttaaaatatacacttccctcctttgaaaagtaaaatttatactctcctcccctataagatgcttgaatta 36604851  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 16536422 - 16536495
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaatt 122  Q
    |||||| ||||||||||||||||||  |||||||||||||||  ||| | |||| | ||||  |||||||||||    
T  16536422 ttatgttaaaatatacactcccctcccttgaaaagtaaatttgatactcccctcccttatgagatgcttgaatt 16536495  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 59311 - 59392
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 130  Q
    |||||| ||||||||||||||||||  |||||||||||| ||| ||| | ||||  ||||   ||||||||||||| |||||    
T  59311 ttatgttaaaatatacactcccctcccttgaaaagtaaaatttatactcccctcctctataagatgcttgaattacaacccc 59392  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 14746 - 14665
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 130  Q
    |||||| ||||||||||||||||||  |||||||||||  ||| ||| | |||| ||||||  ||||||||| ||| |||||    
T  14746 ttatgttaaaatatacactcccctcccttgaaaagtaatatttatactcccctcccctatgagatgcttgaaatacaacccc 14665  T

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Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 28892 - 28811
Alignment:
Q  49 ttatgtaaaaatatacactcccctcggttgaaaagtaaattttttacgctcctctcctatggaatgcttgaattacgacccc 130  Q
    |||||| ||||||||||||||||||  |||||||||||  ||| ||| | |||| ||||||  ||||||||| ||| |||||    
T  28892 ttatgttaaaatatacactcccctcccttgaaaagtaatatttatactcccctcccctatgagatgcttgaaatacaacccc 28811  T

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