View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_23 (Length: 364)
Name: NF16668_low_23
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 30 - 364
Target Start/End: Complemental strand, 3428478 - 3428144
Alignment:
| Q |
30 |
aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatagagggaaagttaggagat |
129 |
Q |
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| T |
3428478 |
aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatatagggaaagttaggagat |
3428379 |
T |
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| Q |
130 |
caaggagcaaaaacattccttaattggtttctgcaagagctttttgagtaagacatttgaagtttttctacacaaaattagtcatcagtgagaccaagtt |
229 |
Q |
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| T |
3428378 |
caaggagcaaaaacattccttaattggtttctgcaagagctttttgagtaagacatttgaagtttttctacacaaaattagtcatcagtgagaccaagtt |
3428279 |
T |
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| Q |
230 |
tattcatagcctttgtaacgcatattatcagttcaacaaaaaatatcggattcaacaactgcaatatgattaaacatgctctgtctatttggatctaatg |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
3428278 |
tattcatagcctttgtaacgcatattatcagttcaacaaaaaatatcggattcaacaactgcaatatgattaaacatactttgtctatttggatctaatg |
3428179 |
T |
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| Q |
330 |
gagtagcaaatgtgtgagctagggtatgaactgct |
364 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
3428178 |
gagtggcaaatgtgtgagctagggtatgaactgct |
3428144 |
T |
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