View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_26 (Length: 342)
Name: NF16668_low_26
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 36572776 - 36572463
Alignment:
| Q |
11 |
aaatataaatcaacaaaagtttaataccaagattgtttgaatataattggaaagttaattttgagactaattatatttatacacttttaaaaaagattgt |
110 |
Q |
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| T |
36572776 |
aaatataaatcaacaaaagtttaataccaagattgtttgaatataattggaaagttaattttgagactaattatatttatacacttttaaaaaagattgt |
36572677 |
T |
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| Q |
111 |
catacttcggagactaaagattatgaaggagttttggagactaaagattacgaaggagtnnnnnnnnnnnnnnnnnnnnnnnctttattttgagactaaa |
210 |
Q |
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| T |
36572676 |
catacttcggagactaaagattatgaaggagttttggagactaaagattacgaaggagtaaaatgtgaaagaaaaaagaaaactttattttgagactaaa |
36572577 |
T |
|
| Q |
211 |
agacgagttaaacttttttctacctcttcaaatattaccaagaactttggtcacactctatattagctaatgcatatgcacaaaaatttacttccttgta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36572576 |
agacgagttaaacttttttctacctcttcaaatattaccaagaactttggtcacactctatattagctaatgcatatgcacaaaaatttacttccttgta |
36572477 |
T |
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| Q |
311 |
agaatgacaaatct |
324 |
Q |
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|||||||||||||| |
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| T |
36572476 |
agaatgacaaatct |
36572463 |
T |
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