View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_low_28 (Length: 321)

Name: NF16668_low_28
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_low_28
NF16668_low_28
[»] scaffold0088 (2 HSPs)
scaffold0088 (13-311)||(46335-46633)
scaffold0088 (227-267)||(45722-45762)
[»] scaffold0017 (1 HSPs)
scaffold0017 (234-267)||(10284-10317)
[»] chr7 (2 HSPs)
chr7 (227-268)||(39294293-39294334)
chr7 (227-267)||(13460360-13460400)
[»] chr8 (3 HSPs)
chr8 (227-267)||(22499447-22499487)
chr8 (227-267)||(24905939-24905979)
chr8 (227-267)||(25607891-25607931)
[»] chr6 (2 HSPs)
chr6 (227-267)||(17858510-17858550)
chr6 (227-267)||(29163057-29163097)
[»] chr4 (1 HSPs)
chr4 (227-267)||(54366190-54366230)
[»] chr3 (1 HSPs)
chr3 (227-267)||(15988521-15988561)
[»] chr1 (1 HSPs)
chr1 (227-267)||(33383913-33383953)


Alignment Details
Target: scaffold0088 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 46633 - 46335
Alignment:
Q  13 aattaaaagaattgaaaaaagataaaacgatggattataatttattgtatatcgtactacgccatcaataacacgattctgccgaatttctatcacatga 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46633 aattaaaagaattgaaaaaagataagacgatggattataatttattgtatatcgtactacgccatcaataacacgattctgccgaatttctatcacatga 46534  T
Q  113 gttgctcttgctagtgtctgcttgtaattgaagcctctccgtgctatgtttgacatcattttctggatcaaaataacaacaaattgtcaaaacaattaat 212  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46533 gttgctcttgctagtggctgcttgtaattgaagcctctccgtgctatgtttgacatcattttctggatcaaaataacaacaaattgtcaaaacaattaat 46434  T
Q  213 cacaaaaccccagaataaatattctcaacagtcgcagcggatatggatcatacataatttaaatatagacacataaataggtatcttatacttactaca 311  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46433 cacaaaatcccagaataaatattctcaacaatcgcagcggatatggatcatacataatataaatatagacacataaataggtatcttatacttactaca 46335  T

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Target: scaffold0088; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 45762 - 45722
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  45762 ataaatattctcaacagtcgcagaggatatggatcatacat 45722  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 10284 - 10317
Alignment:
Q  234 ttctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||||||||||||||||||||| ||||||||||    
T  10284 ttctcaacagtcgcagcggatatagatcatacat 10317  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 39294334 - 39294293
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacata 268  Q
    ||||| ||||||||||||||||||||||||  ||||||||||    
T  39294334 ataaaaattctcaacagtcgcagcggatataaatcatacata 39294293  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 13460360 - 13460400
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||| ||||||||||||||||||||||||  |||||||||    
T  13460360 ataaaaattctcaacagtcgcagcggatataaatcatacat 13460400  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 22499487 - 22499447
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||| |||||||||||| ||||||||||| ||||||||||    
T  22499487 ataaaaattctcaacagttgcagcggatatagatcatacat 22499447  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 24905939 - 24905979
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    |||||||||||||||||||| |||||||||  |||||||||    
T  24905939 ataaatattctcaacagtcgtagcggatataaatcatacat 24905979  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 25607891 - 25607931
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    |||||| |||||||||||||||||||||||  |||||||||    
T  25607891 ataaattttctcaacagtcgcagcggatataaatcatacat 25607931  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 17858550 - 17858510
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||| ||||||||||||||||||||||||  |||||||||    
T  17858550 ataaaaattctcaacagtcgcagcggatataaatcatacat 17858510  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 29163097 - 29163057
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||| ||||||||||||| |||||||||| ||||||||||    
T  29163097 ataaaaattctcaacagtcacagcggatatagatcatacat 29163057  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 54366230 - 54366190
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||| |||||||||||||| ||||||||| ||||||||||    
T  54366230 ataaaaattctcaacagtcgtagcggatatagatcatacat 54366190  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 15988521 - 15988561
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||| ||||||||||||||||||||||||  |||||||||    
T  15988521 ataaaaattctcaacagtcgcagcggatatatatcatacat 15988561  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 33383913 - 33383953
Alignment:
Q  227 ataaatattctcaacagtcgcagcggatatggatcatacat 267  Q
    ||||| |||||||||||| ||||||||||| ||||||||||    
T  33383913 ataaaaattctcaacagttgcagcggatatagatcatacat 33383953  T

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