View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16668_low_29 (Length: 315)
Name: NF16668_low_29
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 2591596 - 2591890
Alignment:
| Q |
3 |
ttgaaaaatcccagcaaggatcaagtaatgaaagtattagacaatcttgatttgctggcattggacttgcatgtgcacaaagtatcaaagtttgtagtta |
102 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
2591596 |
ttgaaaaatcccaacaaggcccaagtcatgaaagtattagacaatcttggtatgctggcattggacttgcatgtgcacaaagtatcaaattgtgtagtta |
2591695 |
T |
|
| Q |
103 |
tgctttgagcttttggtatggtgggaaccttgtgtcgcaaggttatatctcagctaaggcgttatttaagacttttatgattttggtaactactggaaaa |
202 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |
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| T |
2591696 |
tgctttgaccttttggtatggtgggaaaattgtgtcgcaaggttatatctcagctaaggcgttattcaagacttttataattttggtaactaccggaaaa |
2591795 |
T |
|
| Q |
203 |
gttattgctgatgctggtagcatgacgaatgatcttgctaaaggttctgatgccattgggtcggttttcacaatccttgataggtatacgaaaat |
297 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2591796 |
gtaattgctgatgctggtagcatgacgaatgatcttgctaaaggttccgatgccattgaatcggttttcacaatccttgataggtatacgaaaat |
2591890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 2623140 - 2623435
Alignment:
| Q |
3 |
ttgaaaaatcccagcaaggatcaagtaatgaaagtattagacaatcttgatttgctggcattggacttgcatgtgcacaaagtatcaaagtttgtagtta |
102 |
Q |
| |
|
|||||||||| || ||||| ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
2623140 |
ttgaaaaatctcaacaaggcccaagtcatgaaagtattagacaatcttggtatgctggcattggacttgcatgtgcacaaagtatcaagttatgtagtta |
2623239 |
T |
|
| Q |
103 |
tgctttgagcttttggtatggtgggaaccttgtgtcgcaaggttatatctcagctaaggcgttatttaagacttttatgattttggtaactactggaaaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||||| ||| |||||| |
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|
| T |
2623240 |
tgctttgagcttttggtatggtgggaaacttgtgttgcaaggttatatctcagccaaggcgttatttaagacttttttaattttggtaagtaccggaaaa |
2623339 |
T |
|
| Q |
203 |
gttattgctgatgctggtagcatgacgaatgatcttgctaaaggttctgatgccattgggtcggttttcacaatccttgataggtatacgaaaatc |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2623340 |
gttatcgctgatgctggtagcatgacgaatgatcttgctaaaggttctgatgccattgcgtcggttttcacaatccttgataggtatacgaaaatc |
2623435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 2597219 - 2596937
Alignment:
| Q |
17 |
caaggatcaagtaatgaaagtattagacaatcttgatttgctggcattggacttgcatgtgcacaaagtatcaaagtttgtagttatgctttgagctttt |
116 |
Q |
| |
|
|||||| |||| |||||||||||||||| || || ||||| || ||||||||||||||| |||||||| |||| |||||| || |||||| ||||| |
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|
| T |
2597219 |
caaggaccaagccatgaaagtattagacagtcctggtttgcaggtattggacttgcatgttcacaaagtctcaatttttgtaattgggctttggactttt |
2597120 |
T |
|
| Q |
117 |
ggtatggtgggaaccttgtgtcgcaaggttatatctcagctaaggcgttatttaagacttttatgattttggtaactactggaaaagttattgctgatgc |
216 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||| |
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|
| T |
2597119 |
ggtatggtggaaaacttgtgtcgcaaggttatatctcggctaaggcgttattcgagacttttatgattttggtaagtacaggaagagttattgctgatgc |
2597020 |
T |
|
| Q |
217 |
tggtagcatgacgaatgatcttgctaaaggttctgatgccattgggtcggttttcacaatccttgataggtatacgaaaatcg |
299 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| |||| |||| ||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
2597019 |
cggtagcttgacgaatgatcttgctaaaggctctaatgcggttggatcggttttcacaatcctcgataggtatacaaaaatcg |
2596937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 297
Target Start/End: Complemental strand, 2673049 - 2672755
Alignment:
| Q |
3 |
ttgaaaaatcccagcaaggatcaagtaatgaaagtattagacaatcttgatttgctggcattggacttgcatgtgcacaaagtatcaaagtttgtagtta |
102 |
Q |
| |
|
|||||||| | || |||||| |||| |||||||||||||||| || || ||||| || ||||||||||||||| |||||||| |||| |||||| || |
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|
| T |
2673049 |
ttgaaaaagcacaacaaggaccaagccatgaaagtattagacagtcctggtttgcaggtattggacttgcatgttcacaaagtctcaatttttgtacttg |
2672950 |
T |
|
| Q |
103 |
tgctttgagcttttggtatggtgggaaccttgtgtcgcaaggttatatctcagctaaggcgttatttaagacttttatgattttggtaactactggaaaa |
202 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||| |||| | |
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|
| T |
2672949 |
ggctttggacttttggtatggtggaaaacttgtgtcgcaaggttatatctcggctaaggctttattcgagacttttatgattttggtaagtacaggaaga |
2672850 |
T |
|
| Q |
203 |
gttattgctgatgctggtagcatgacgaatgatcttgctaaaggttctgatgccattgggtcggttttcacaatccttgataggtatacgaaaat |
297 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| || |||| ||| ||||||| ||||| |
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|
| T |
2672849 |
gttattgctgatgcaggtagcatgacaaatgatcttgctaaaggctctgatgccgttggatcggtttttgcagtcctcgatcggtatacaaaaat |
2672755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 30 - 298
Target Start/End: Complemental strand, 2569647 - 2569379
Alignment:
| Q |
30 |
atgaaagtattagacaatcttgatttgctggcattggacttgcatgtgcacaaagtatcaaagtttgtagttatgctttgagcttttggtatggtgggaa |
129 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| || ||||| ||||||||| ||||| || |||| || || || |||||| ||||||||||||||| || |
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|
| T |
2569647 |
atgaaagtgttagacagtcttggtttgcaggtattgggcttgcatgttcacaatgtctcaattattctacttgggctttggacttttggtatggtggaaa |
2569548 |
T |
|
| Q |
130 |
ccttgtgtcgcaaggttatatctcagctaaggcgttatttaagacttttatgattttggtaactactggaaaagttattgctgatgctggtagcatgacg |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||||| |
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|
| T |
2569547 |
acttgtgtcgcaaggttatatctcggctaaggcgttatttaaaacttttatgattttggtaagtacaggaagagttattgctgatgccggtagcatgacg |
2569448 |
T |
|
| Q |
230 |
aatgatcttgctaaaggttctgatgccattgggtcggttttcacaatccttgataggtatacgaaaatc |
298 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| || ||||| |||| || ||||||||||| |||||| |
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|
| T |
2569447 |
agtgatcttgctaaaggctctgatgccattggatcagtttttgcaattctcgataggtatacaaaaatc |
2569379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 2641862 - 2641601
Alignment:
| Q |
30 |
atgaaagtattagacaatcttgatttgctggcattggacttgcatgtgcacaaagtatcaaagtttgtagttatgctttgagcttttggtatggtgggaa |
129 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| || | |||| | |||||| ||||||||| ||||| || |
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|
| T |
2641862 |
atgaaagtattagacagtcttggtttgctggcattggacttgcatgttcacaaagcctctttttgtgtacctgggctttggacttttggtacggtggaaa |
2641763 |
T |
|
| Q |
130 |
ccttgtgtcgcaaggttatatctcagctaaggcgttatttaagacttttatgattttggtaactactggaaaagttattgctgatgctggtagcatgacg |
229 |
Q |
| |
|
|||||||| ||||||||||| || || || || |||||| ||||||||||||| ||| ||| ||| |||| ||||||||| ||||| ||||||||||| |
|
|
| T |
2641762 |
acttgtgtcacaaggttatatttcggcaaaagcattatttgagacttttatgatcttgataagtaccggaagagttattgcagatgccggtagcatgaca |
2641663 |
T |
|
| Q |
230 |
aatgatcttgctaaaggttctgatgccattgggtcggttttcacaatccttgataggtatac |
291 |
Q |
| |
|
||||||||||||||||| ||| |||| |||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
2641662 |
aatgatcttgctaaaggctctaatgcagttggatcggttttcgcaatcctcgataggtatac |
2641601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 2439647 - 2439944
Alignment:
| Q |
3 |
ttgaaaaatcccagcaaggatcaagtaatgaaagtattagacaatcttgatttgctggcattggacttgcatgtgcacaaagtatcaaagtttgtagtta |
102 |
Q |
| |
|
|||||||| |||| ||||| || || |||||||||| ||||||||||| | ||| || ||||||||||||||| ||||||| ||| |||||| | |
|
|
| T |
2439647 |
ttgaaaaagcccaacaaggcccacgtcatgaaagtatcagacaatcttggtatgcgggtattggacttgcatgttcacaaagcctcattttttgtactag |
2439746 |
T |
|
| Q |
103 |
tgctttgagcttttggtatggtgggaaccttgtgtcgcaaggttatatctcagctaaggcgttatttaagacttttatgattttggtaactactggaaaa |
202 |
Q |
| |
|
|| || | ||||||||||||||| || ||||| || ||||| ||||| || || || ||| |||| ||||||||| | ||| | ||||||| |
|
|
| T |
2439747 |
agccttaaacttttggtatggtggaaaacttgtctcacaaggatatataacaaaaaatcaattttttgagacaattatgatttggataagcattggaaaa |
2439846 |
T |
|
| Q |
203 |
gttattgctgatgctg---gtagcatgacgaatgatcttgctaaaggttctgatgccattgggtcggttttcacaatccttgataggtatacgaaaat |
297 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| | | || ||||| |||| |||||||||||||||||||| |
|
|
| T |
2439847 |
gttattgcagatgctgcgagtagcatgactaatgatcttgctaaaggttctgatgccgtcagatcagtttttgcaattcttgataggtatacgaaaat |
2439944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 2450372 - 2450669
Alignment:
| Q |
3 |
ttgaaaaatcccagcaaggatcaagtaatgaaagtattagacaatcttgatttgctggcattggacttgcatgtgcacaaagtatcaaagtttgtagtta |
102 |
Q |
| |
|
|||||||| |||| ||||| ||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||||||| || | ||||| | |
|
|
| T |
2450372 |
ttgaaaaagcccaacaaggcccaagtcatgaaaacattagacaatcttggtttgctggtattgggcttgcatgtgcacaaagtctccattcttgtattag |
2450471 |
T |
|
| Q |
103 |
tgctttgagcttttggtatggtgggaaccttgtgtcgcaaggttatatctcagctaaggcgttatttaagacttttatgattttggtaactactggaaaa |
202 |
Q |
| |
|
|| || ||||||||| ||||| || |||||||| ||||| ||||| || ||||||| |||||| ||||| ||||||||| | ||| || ||||| | |
|
|
| T |
2450472 |
ggcattccacttttggtacggtggaaaacttgtgtctcaaggatatataacaactaaggcattatttgagactattatgatttggttaagtattggaaga |
2450571 |
T |
|
| Q |
203 |
gttattgctgatgctg---gtagcatgacgaatgatcttgctaaaggttctgatgccattgggtcggttttcacaatccttgataggtatacgaaaat |
297 |
Q |
| |
|
||||||| | ||| || | |||||| ||||| ||||||||||| | ||||| ||||||| || ||| |||| |||||||||||||| ||||| |
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|
| T |
2450572 |
gttattgtttatgttgtaaacaacatgactaatgaccttgctaaaggctttgatgttgttgggtcagtgttcgcaattcttgataggtatacaaaaat |
2450669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 33786401 - 33786340
Alignment:
| Q |
183 |
ttttggtaactactggaaaagttattgctgatgctggtagcatgacgaatgatcttgctaaa |
244 |
Q |
| |
|
||||||| | ||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
33786401 |
ttttggtgagtaccggaaaagttatagctgaagctggtagcatgacttctgatcttgctaaa |
33786340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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