View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16668_low_31 (Length: 308)
Name: NF16668_low_31
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 37593492 - 37593768
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593492 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37593591 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593592 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
37593691 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593692 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
37593768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 37695883 - 37696159
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695883 |
acagaatcattatagtaataaccgtcacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37695982 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695983 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
37696082 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696083 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
37696159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 37532387 - 37532664
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
37532387 |
cacagaatcattatagtaataacccgcacccttgtattgcaaaccaatttggctgtcattcacattcatcattcctttaaagttcttgatgcatgatatt |
37532486 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532487 |
ggcaagggcccactaaaattgttgttagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
37532586 |
T |
|
| Q |
211 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532587 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
37532664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 37823192 - 37823468
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823192 |
acagaatcattgtagtaataagagtcacccatgtattgcaaaccaatttggtcgtcactcacattcatcattccttgaaagttcttgatgcatgatgttg |
37823291 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37823292 |
gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt |
37823391 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
||||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
37823392 |
tgatcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcac |
37823468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 37401870 - 37401594
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401870 |
acagaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37401771 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37401770 |
gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt |
37401671 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
||||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
37401670 |
tgatcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcac |
37401594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 37639034 - 37639310
Alignment:
| Q |
12 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
111 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639034 |
acagaatcattgtagtaataagagtcacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37639133 |
T |
|
| Q |
112 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
211 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37639134 |
gcaagggcccactaaaattgttgttagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatt |
37639233 |
T |
|
| Q |
212 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
||||||||| |||| || ||||||||| |||||||||||||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
37639234 |
tgatcgtaaacttatcacctgtaactctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcac |
37639310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 38 - 288
Target Start/End: Complemental strand, 37393723 - 37393473
Alignment:
| Q |
38 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgata |
137 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |
|
|
| T |
37393723 |
acccatgtattgcaaaccaatttggctgttattcacatccatcattccttgaaagttcttgaagcatgatgttggcaaggggccactaaaattgttacta |
37393624 |
T |
|
| Q |
138 |
gaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaact |
237 |
Q |
| |
|
|| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||| || ||||||| |
|
|
| T |
37393623 |
gagacatcataaattctcaacttaggaaatggatgcttggtgctagaacatgtgattgacccatgaagatgatttgatcgtaaacttagcacctgtaact |
37393524 |
T |
|
| Q |
238 |
cttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
37393523 |
cttgtagagtttctagccaattgggaaaagtatcctctatgttgttgtcac |
37393473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 288
Target Start/End: Original strand, 37702023 - 37702247
Alignment:
| Q |
64 |
tgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttagg |
163 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
37702023 |
tgtcatttacattaatcattccttgaaagttcttgatgcatgatgttggcaaggggccactaaaattgttgttagaggcatcaaaaattctcaacttagg |
37702122 |
T |
|
| Q |
164 |
aaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttgga |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || || ||||||||| ||| ||||||||||||||| ||| |
|
|
| T |
37702123 |
aaatgaatgcttggtgctagaacaagtgattgcaccatgaagatgatttgatcgtaaactcagcacctgtaactctggtaaagtttctagccaattggga |
37702222 |
T |
|
| Q |
264 |
aatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
37702223 |
aatgtatcctctatgttgttgtcac |
37702247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 43 - 288
Target Start/End: Original strand, 37710823 - 37711068
Alignment:
| Q |
43 |
tgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaac |
142 |
Q |
| |
|
||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |
|
|
| T |
37710823 |
tgtattgcagatcaatttttttgtcattcaccttcatcattccttgaaagttcttgatgcatgatgctggcaagggcccactaaaattgttgttagagac |
37710922 |
T |
|
| Q |
143 |
atcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgt |
242 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||||||| || |
|
|
| T |
37710923 |
atcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaactctggt |
37711022 |
T |
|
| Q |
243 |
agagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
37711023 |
agagtttctagccaatcaggaaatgtatcctcaacgttgttgtcac |
37711068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 37383199 - 37382924
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
37383199 |
cacagaatcattatagtaattggacttacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaaattcttgatgcacgatgtt |
37383100 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
210 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||| ||| ||||||||||| || |||||||| |||||||| |||| |
|
|
| T |
37383099 |
ggcaagggcccaataaaattgttgttagagacatcaaaaattctcaacttgggaaatggatgtttggtgctagagcatgtgattgcgccatgaagtttat |
37383000 |
T |
|
| Q |
211 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtc |
286 |
Q |
| |
|
|||||| ||| || || || ||||| |||||||||||||| |||||||| ||||| || ||||||| ||||||||| |
|
|
| T |
37382999 |
ttgatcttaaactgagcacctgtaattcttgtagagtttcaagccaattgggaaaagtatcctctacgttgttgtc |
37382924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 37434997 - 37435271
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
|||||||||||||||||||| | |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37434997 |
cacagaatcattatagtaattgttcttacccatgtattgcaaaccaatctggctatcattcacattcatcattccttgaaagttcttgatacatgatgtt |
37435096 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaa-acatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagatta |
209 |
Q |
| |
|
||||||| |||||||||||||| | ||| | ||||||||||| ||||||| ||| | ||| |||||| ||||||| ||||||| ||||| ||| ||| |
|
|
| T |
37435097 |
ggcaaggatccactaaaattgtt-accgaagatgtcaaaaattcttaacttagaaaaaggatggttggtgttagaacaggtgattgaaccattaagttta |
37435195 |
T |
|
| Q |
210 |
tttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgt |
285 |
Q |
| |
|
||||||| ||| || || || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
37435196 |
tttgatcttaaactgagtacctgtaactcttgtagagtttctagccaattgggaaatgtatcctctatgttgttgt |
37435271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 37413910 - 37413761
Alignment:
| Q |
139 |
aaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactc |
238 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
37413910 |
aaacataaaatattctcaacttgggaaatgtatgctttgtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttagcacctgtaactc |
37413811 |
T |
|
| Q |
239 |
ttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
37413810 |
ttgtagagtttctagccaattgggaaatgtatcctctatattgttgtcac |
37413761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 37428339 - 37428543
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
|||||||||||||||||||| || |||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| |
|
|
| T |
37428339 |
cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc |
37428438 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
210 |
Q |
| |
|
|||||||| ||||||||| | || || | | || |||||||||||||| || |||| ||| ||||| ||||||||||||||| |||||| || |||| |
|
|
| T |
37428439 |
ggcaagggaccactaaaaattttattatagatgtcgaaaattctcaactt-gggaatggatgtttggtcatagaacaagtgattgtaccatgcagtttat |
37428537 |
T |
|
| Q |
211 |
ttgatc |
216 |
Q |
| |
|
|||||| |
|
|
| T |
37428538 |
ttgatc |
37428543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 26437679 - 26437767
Alignment:
| Q |
80 |
cattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatg |
168 |
Q |
| |
|
|||||||| |||||| |||||| | | ||| ||||| | ||||||||||| ||| | || |||||||||| |||||||||||||||| |
|
|
| T |
26437679 |
cattcctttaaagtttttgatgtacgttgtgggcaaagagccactaaaattattgttggagacatcaaaaaccctcaacttaggaaatg |
26437767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 26451048 - 26451136
Alignment:
| Q |
80 |
cattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatg |
168 |
Q |
| |
|
|||||||| |||||| |||||| | | ||| ||||| | ||||||||||| ||| | || |||||||||| |||||||||||||||| |
|
|
| T |
26451048 |
cattcctttaaagtttttgatgtacgttgtgggcaaagagccactaaaattattgttggagacatcaaaaaccctcaacttaggaaatg |
26451136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 38 - 288
Target Start/End: Original strand, 14552686 - 14552936
Alignment:
| Q |
38 |
acccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgata |
137 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
14552686 |
acccatgtattgcaaaccaatttggctgtcattcacgttcatcattccttgaaagttcttgatgcatgatgttggcaaggtgccactaaaattgttgtta |
14552785 |
T |
|
| Q |
138 |
gaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaact |
237 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
14552786 |
gagacatcaaaaattctcaacttaggaaatgaatgcttgatgctagaacaggtgattgctccgtgaagatgatttgatcgtaaacttagcacttgtaact |
14552885 |
T |
|
| Q |
238 |
cttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
14552886 |
cttgtagagtttctagccaattgggaaatgtatcctctatgctgttgtcac |
14552936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 43 - 288
Target Start/End: Complemental strand, 16843837 - 16843592
Alignment:
| Q |
43 |
tgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgatagaaac |
142 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
16843837 |
tgtattgcaaaccaatctggctatcatccacattcatcattccttgaaagttctggatgcatgatgttggcaaggtgccactaaaattgttgttagagac |
16843738 |
T |
|
| Q |
143 |
atcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatttgatcgtaagcttagaacttgtaactcttgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||| || || |||||||||||| |
|
|
| T |
16843737 |
atcaaaaattctcaacttaggaaatggatgcttggtgctagaacaagtgattactccatgaagattattagatcgtaaaacgagtacctgtaactcttgt |
16843638 |
T |
|
| Q |
243 |
agagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
|||||||| |||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
16843637 |
agagtttcaagccaactgggaaatgtatcctctatgttgttgtcac |
16843592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 16846536 - 16846260
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
|||||||||||||||||||| || ||| |||| ||||||||| ||| | |||||| | ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
16846536 |
cacagaatcattatagtaattgacctttcccatgtactgcaaaccagttttattatcattcgcgttcatcattccttgaaaattcttgatacatgatgtt |
16846437 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaa-acatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagatta |
209 |
Q |
| |
|
||||| || ||||| || ||||| || ||| | || ||||||||||| || ||||||| |||||||||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
16846436 |
ggcaacggtccactgaatttgtt-atcgaagatgtccaaaattctcaattt-ggaaatggatgcttggtgctagaacatgtgattgaaccataaagttta |
16846339 |
T |
|
| Q |
210 |
tttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcac |
288 |
Q |
| |
|
||||| | ||| || || || |||||||||||||||||||| |||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
16846338 |
tttgaccttaaactgagtacatgtaactcttgtagagtttcaagccaactgggaaatgtatcctctatgttgttgtcac |
16846260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 24218604 - 24218329
Alignment:
| Q |
11 |
cacagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgtt |
110 |
Q |
| |
|
||||||||||||||| |||| || |||| |||||||||||||| || || |||||||||| |||||||||||||| ||||||| ||| |||||| |
|
|
| T |
24218604 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattcttgaggcaagatgtt |
24218505 |
T |
|
| Q |
111 |
ggcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
210 |
Q |
| |
|
|||| ||| |||| ||||| || ||| ||||| ||||||||| ||| |||||||| || ||||||||||||||||||||| |||||||||||| || |
|
|
| T |
24218504 |
ggcacggggccacggaaattattaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgattccaccatgaagatgat |
24218405 |
T |
|
| Q |
211 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtc |
286 |
Q |
| |
|
|||||||||| || || || ||||||||||| ||| ||||| |||||| |||||||| || | |||| ||||||| |
|
|
| T |
24218404 |
ttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtc |
24218329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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