View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_33 (Length: 306)
Name: NF16668_low_33
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 15395868 - 15395581
Alignment:
| Q |
1 |
agaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccctgaaagcaatc |
100 |
Q |
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| T |
15395868 |
agaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccctgaaagcaatc |
15395769 |
T |
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| Q |
101 |
atcacaagttttcgattttgaattaaccgtttaccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaacaaacctgttatgc |
200 |
Q |
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| T |
15395768 |
atcacaagttttcgattttgaattaacctttttccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaacaaacctgttatgc |
15395669 |
T |
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| Q |
201 |
taagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctcttaa |
288 |
Q |
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| T |
15395668 |
taagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctcttaa |
15395581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 15387494 - 15387207
Alignment:
| Q |
1 |
agaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccctgaaagcaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387494 |
agaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccctgaaagcaatc |
15387395 |
T |
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| Q |
101 |
atcacaagttttcgattttgaattaaccgtttaccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaacaaacctgttatgc |
200 |
Q |
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| T |
15387394 |
atcacaagttttcgattttgaattaaccatttgccttattgaataattttaaaacactaatcaaatcaaaagttatcaaaattaaacaaacctgttatgc |
15387295 |
T |
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| Q |
201 |
taagcaagattccaccaagggaaagccaactatctttgtgtccgtctcttagataccgatacacgtagagaggcgaaaaggctcttaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15387294 |
taagcaagattccaccaagggaaagccaactatctttgcgtccgtctcttagataccgatacacgtagagaggcgaaaaggctcttaa |
15387207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 38667232 - 38667321
Alignment:
| Q |
1 |
agaaggcaaggaaacaccacgagagtaaatgcaatttgtacagatgacactggaaaattggctaagtcggcaaaaagagcttctgtccct |
90 |
Q |
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|||||||| |||||||| || ||||||||||||| ||||||| ||| || ||||||| | || |||||| |||||||| || |||||| |
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| T |
38667232 |
agaaggcagggaaacacaaccagagtaaatgcaagctgtacagctgagaccggaaaatgagataggtcggcgaaaagagcctccgtccct |
38667321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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