View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_35 (Length: 300)
Name: NF16668_low_35
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 37501240 - 37500980
Alignment:
| Q |
18 |
ggatccacatatttgtatctccatctccgttttgtaggagaaaccatcttctaacacatcaagagttttgaggattgcattccaaataggtgaacctgtt |
117 |
Q |
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| T |
37501240 |
ggatccacatatttgtatctccatctccgttttgtaggagaaaccatcttctaacacataaagagttttgaggattgcattccaaataggtgaacctgtt |
37501141 |
T |
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| Q |
118 |
tttggtttttctaaaaacatattccccttttcaagtatttatcagcaaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37501140 |
tttgctttttctaaaaacatattccccttttcaagtatttatcagcaaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttt |
37501041 |
T |
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| Q |
218 |
tcccaacaaagttgtgttttgtagtcgagctggatgaactcctagacctccaagcttccta |
278 |
Q |
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| T |
37501040 |
tcccaacaaagttgtgttttgtagtcgagttggatgaactcctagacctccaagcttccta |
37500980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 9194301 - 9194558
Alignment:
| Q |
22 |
ccacatatttgtatctccatctccg-ttttgtaggagaaaccatcttctaacacatcaagagttttgaggattgcattccaaataggtgaacctgttttt |
120 |
Q |
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| T |
9194301 |
ccacatatttgtatctccatcaacaattttttaggcgaaaccatcttttaaaatatcaagagacttgaggattgcattccaaattggcgaacc-gtcctt |
9194399 |
T |
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| Q |
121 |
ggtttttctaaaaacatattcccct-tttcaagtatttatcagcaaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttttc |
219 |
Q |
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| T |
9194400 |
gatttgtatataaacattttaccctcttttaagtatttattggcaaggatagacacccataattttgtgtctgattgcttaagacaacaaacaagttttc |
9194499 |
T |
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| Q |
220 |
ccaacaaagttgtgttttgtagtcgagctggatgaactcctagacctccaagcttccta |
278 |
Q |
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| T |
9194500 |
ccaacaaagttgtgttttgttatcatgctggctgaaatcctagacctccaagcttccta |
9194558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 8989410 - 8989260
Alignment:
| Q |
22 |
ccacatatttgtatctccatctccg-ttttgtaggagaaaccatcttctaacacatcaagagttttgaggattgcattccaaataggtgaacctgttttt |
120 |
Q |
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||||||| |||||||| ||||||| ||||||||| | ||||||| || ||| ||||| ||||||||| ||||| || || ||||||| ||| ||| ||| |
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| T |
8989410 |
ccacataattgtatcttcatctccaattttgtaggcggaaccatcatcaaacgcatcacgagttttgatgattgaatacctaataggtaaacatgtcttt |
8989311 |
T |
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| Q |
121 |
ggtttttctaaaaacatattcccct-tttcaagtatttatcagcaaggata |
170 |
Q |
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| T |
8989310 |
gctttttctgaaaatatattaccctctttcaagtatttatcggcaaggata |
8989260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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