View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_36 (Length: 288)
Name: NF16668_low_36
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 43107534 - 43107271
Alignment:
| Q |
1 |
ttatctattattttttccatcatatacatctctcatgcgccttattttgttattctaaaatacattttctttggattatataatctaaacctttttatgg |
100 |
Q |
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| T |
43107534 |
ttatctattattttttccatcatatacatctctcatgcgccttattttgttattctaaaatacattttcttcggattatataatctaaacctttttatgg |
43107435 |
T |
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| Q |
101 |
ggatttttcggattatacaatccgaaacacattgaaacttaaaaatggtgttgtaattgatatcaaaggtctttgttgaccaccatccgatcgataacgg |
200 |
Q |
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| T |
43107434 |
agatttttcggattatacaatccgaaacacattgaaacttaaaaatggtgttgtaattgatatcataggtctttgttgaccaccatccgatcgataacgg |
43107335 |
T |
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| Q |
201 |
caaaacaatttcaaagatcatatgaatggtcaacaatgatcatgatataatgaaccacttataa |
264 |
Q |
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| T |
43107334 |
caaaacaatttcaaagatcatatgaatggtcaacaatgatcatgatataatgaaccacttataa |
43107271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 17776158 - 17776256
Alignment:
| Q |
70 |
tttggattatataatctaaacctttttatggggatttttcggattatacaatccgaaacacattgaaacttaaaaatggtgttgtaattgatatcaaagg |
169 |
Q |
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| T |
17776158 |
tttggattatataatccgaacttctttaaagggatttct-ggattataaaatccaaaacatgttgaaacctagaaatggtgttgtagttgatatcaaagg |
17776256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 5529446 - 5529526
Alignment:
| Q |
100 |
gggatttttcggattatacaatccgaaacacattgaaacttaaaaatggtgttgtaattgatatcaaaggtctttgttgacca |
182 |
Q |
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| T |
5529446 |
gggattttt-ggattacacaatccgaaacatattgaaactcataaatggttgtgtaattgatatc-aaggtctttgctgacca |
5529526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 18406106 - 18406143
Alignment:
| Q |
53 |
ttctaaaatacattttctttggattatataatctaaac |
90 |
Q |
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| T |
18406106 |
ttctaaaatacattttgtttggattatataatctaaac |
18406143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 27060308 - 27060255
Alignment:
| Q |
206 |
caatttcaaagatcatatgaatggtcaacaatgatcatgatataatgaaccact |
259 |
Q |
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| T |
27060308 |
caatttcagagatcgtataaatggtcaatagtgatcatgatatcatgaaccact |
27060255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 42247084 - 42247120
Alignment:
| Q |
148 |
gtgttgtaattgatatcaaaggtctttgttgaccacc |
184 |
Q |
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| T |
42247084 |
gtgttgtatttgatatcaaaggtctttgctgaccacc |
42247120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 21433718 - 21433766
Alignment:
| Q |
216 |
gatcatatgaatggtcaacaatgatcatgatataatgaaccacttataa |
264 |
Q |
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| T |
21433718 |
gatcctatgaatggtcaacaatgaccatgatatcataaaccacttataa |
21433766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 11236292 - 11236352
Alignment:
| Q |
112 |
attatacaatccgaaacacattgaaacttaaaaatggtgttgtaattgatatcaaaggtct |
172 |
Q |
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|||||| |||| ||||| ||||||||||| |||| |||| ||||||||||||||||||| |
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| T |
11236292 |
attatagaatcaaaaacatattgaaacttagaaataatgttttaattgatatcaaaggtct |
11236352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 19441785 - 19441686
Alignment:
| Q |
70 |
tttggattatataatctaaacctttttatggggatttttcggattatacaatccgaaacacattgaaacttaaaaatggtgttgtaattgatatcaaagg |
169 |
Q |
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| T |
19441785 |
tttggattatataatccgaacttctttaaagggatttct-ggattataaaatctaaaacatgttgaaacctataaatgatgttgtagttgatatcaaagg |
19441687 |
T |
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