View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_38 (Length: 284)
Name: NF16668_low_38
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 48311036 - 48311168
Alignment:
| Q |
134 |
gggtacctgagaggataaatcagcagcagtataaatgagtgcagaggtaacacttttagtgagaatagggcgtgattttatcatccccaaataccaacca |
233 |
Q |
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| T |
48311036 |
gggtacctgagaggataaatcagcagcagtataaatgagtgcagaggtaacacttttagtgagaatagggcgtgattttatcatccccaaataccaacca |
48311135 |
T |
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| Q |
234 |
acaaaaccaaccttaggaatagatgcagttgat |
266 |
Q |
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| T |
48311136 |
acaaaaccaaccttaggaatagatgcagttgat |
48311168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 48310917 - 48310998
Alignment:
| Q |
14 |
cataggacaaccaagtgaacaattataacaaacatcaactaaaaaatgttccttttgaacccaaaccaatgaatgcagacaag |
96 |
Q |
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| T |
48310917 |
cataagacaaccaagtgaacaattgtaacaaacatcaactaaaaaa-gttccttttgaacccaaatcaatgaatgcagacaag |
48310998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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