View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_39 (Length: 282)
Name: NF16668_low_39
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_39 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 33 - 282
Target Start/End: Complemental strand, 42770876 - 42770627
Alignment:
| Q |
33 |
gttgaagtgaaggggaagagtaaaaaaggttatacagctgaaggtgagaaagtcgaagaagaacattcaagaagcttatgtggctgaaggtgaaatctct |
132 |
Q |
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| T |
42770876 |
gttgaagtgaaggggaaaagtaaaaaaggttatacagctgaaggtgagaaagtcgaagaagaacattcaagaaacttatgtggctgaaggtgaaatctct |
42770777 |
T |
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| Q |
133 |
tagaatgtttcacaagattttgtggttgaaggtgagaaagcggagaagaaagctctaagaatgttaaataaggtatggctaaaagtgaaatctttgaggc |
232 |
Q |
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| T |
42770776 |
tagaatgtttcacaagattttgtggttgaaggtgagaaagcggagaagaaagctctaagaatgttaaataaggtatggctgaaagtgaaatctttgaggc |
42770677 |
T |
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| Q |
233 |
ggttccacaaagttctgcggctggagatgagaaaacagaagaaaaatttt |
282 |
Q |
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| T |
42770676 |
ggttccacaaggttctgcggctgaagatgagaaagcagaagaaaattttt |
42770627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 42770110 - 42770219
Alignment:
| Q |
98 |
ttcaagaagcttatgtggctgaaggtgaaatctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcgg-agaagaaagctctaagaatgt |
196 |
Q |
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| T |
42770110 |
ttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgt |
42770209 |
T |
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| Q |
197 |
taaataaggt |
206 |
Q |
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| T |
42770210 |
tcaagaaggt |
42770219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 42772323 - 42772436
Alignment:
| Q |
157 |
gttgaaggtgagaaagcgga-gaagaaagctctaagaatgttaaataaggta---tggctaaaagtgaaatctttgaggcggttccacaaagttctgcgg |
252 |
Q |
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| T |
42772323 |
gttgaaggtgggaaagcggaagaagaaaactctaagaacgttaaagaaggttccgtggctgaaggtgaaatctttgagacggttccagaaggttttgcgg |
42772422 |
T |
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| Q |
253 |
ctggagatgagaaa |
266 |
Q |
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| T |
42772423 |
ccgaaggtgagaaa |
42772436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 42773014 - 42772977
Alignment:
| Q |
91 |
aagaacattcaagaagcttatgtggctgaaggtgaaat |
128 |
Q |
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| T |
42773014 |
aagaacattcaagaagcttttgtggctgaaggtgaaat |
42772977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 42772425 - 42772480
Alignment:
| Q |
72 |
gaaggtgagaaagtcgaagaagaacattcaagaagcttatgtggctgaaggtgaaa |
127 |
Q |
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| T |
42772425 |
gaaggtgagaaagaggaagaagaaaactcaagaaggttctgtggctgaaggtgaaa |
42772480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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