View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_low_41 (Length: 273)

Name: NF16668_low_41
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_low_41
NF16668_low_41
[»] chr4 (2 HSPs)
chr4 (21-257)||(106699-106935)
chr4 (122-250)||(166927-167055)
[»] scaffold0013 (1 HSPs)
scaffold0013 (116-246)||(88553-88683)
[»] chr7 (1 HSPs)
chr7 (98-255)||(13055199-13055356)
[»] chr8 (10 HSPs)
chr8 (130-257)||(5656621-5656748)
chr8 (130-256)||(5718237-5718363)
chr8 (130-256)||(5686090-5686216)
chr8 (121-235)||(5638186-5638300)
chr8 (121-235)||(5651384-5651498)
chr8 (155-235)||(5602090-5602170)
chr8 (155-235)||(5602676-5602756)
chr8 (155-235)||(5602938-5603018)
chr8 (155-235)||(5632352-5632432)
chr8 (155-235)||(5638450-5638530)
[»] chr3 (1 HSPs)
chr3 (132-196)||(12134959-12135023)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 106699 - 106935
Alignment:
Q  21 tttccatcaaaaccttaaaacattttatttgtttcaaaactcaaacttcacacttaccatctataaaattaataaagacctattattaatttttgttttg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  106699 tttccatcaaaaccttaaaacattttatttgtttcaaaactcaaacttcacacttaccatctataaaactaataaagacctattattaatttttgttttg 106798  T
Q  121 ttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106799 ttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagt 106898  T
Q  221 atcgtagacgggttccattgccttccactgcagttta 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  106899 atcgtagacgggttccattgccttccactgcagttta 106935  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 166927 - 167055
Alignment:
Q  122 tttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagta 221  Q
    ||||||||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||    
T  166927 tttatttattgcaggatatctcaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattttcccattgtgggctctaaccgagta 167026  T
Q  222 tcgtagacgggttccattgccttccactg 250  Q
    |||||||| ||||||||||||||||||||    
T  167027 tcgtagacaggttccattgccttccactg 167055  T

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Target: scaffold0013 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 88683 - 88553
Alignment:
Q  116 ttttgttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagc 215  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || ||||||||||| ||    
T  88683 ttttattttatttatcgcaggaactcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagaaatatttttccattgtgggctctggc 88584  T
Q  216 cgagtatcgtagacgggttccattgccttcc 246  Q
     ||||||||||||||||||||||||||||||    
T  88583 tgagtatcgtagacgggttccattgccttcc 88553  T

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Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 13055199 - 13055356
Alignment:
Q  98 acctattattaatttttgttttgttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatattta 197  Q
    ||||||||||||||||| | |||| |||||||| | ||| |||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||     
T  13055199 acctattattaatttttctcttgtcttatttattgtagggaatcacaggagtattcttcaaaaattgtatgttgcattatacaatgtatagagatatttt 13055298  T
Q  198 ccccttgtgggctctagccgagtatcgtagacgggttccattgccttccactgcagtt 255  Q
    ||| ||||||||| |||| ||||||||||||   ||||||||| ||||||||| ||||    
T  13055299 cccattgtgggctttagctgagtatcgtagatatgttccattgtcttccactggagtt 13055356  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 257
Target Start/End: Complemental strand, 5656748 - 5656621
Alignment:
Q  130 tggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagac 229  Q
    ||||||||| |||| ||||||||||||||||| || ||| |||||||| | |||||||||||||| |  ||  ||||||||||||| || ||||||||||    
T  5656748 tggcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatatatttccaatgtgggctctagctgaatatcgtagac 5656649  T
Q  230 gggttccattgccttccactgcagttta 257  Q
    |  ||| ||||| |||| || |||||||    
T  5656648 gaattctattgctttcctctacagttta 5656621  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 5718363 - 5718237
Alignment:
Q  130 tggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagac 229  Q
    ||||||||| |||||| ||||||||||||||| || ||| |||||||| |||||| ||||||||| | |||  ||||||||||||| || ||||||| |     
T  5718363 tggcaggaactcacagcagtattcatgaaaaactgcatgctgcattacgcaatgtttagagatatattcccaatgtgggctctagctgaatatcgtaaag 5718264  T
Q  230 gggttccattgccttccactgcagttt 256  Q
    || ||   |||||||||| ||||||||    
T  5718263 ggattatgttgccttccattgcagttt 5718237  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 5686216 - 5686090
Alignment:
Q  130 tggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagac 229  Q
    ||||||||| |||||| ||||||||||||||| || ||| |||||||| | |||| ||||||||| | |||  ||||||||||||| || ||||||| |     
T  5686216 tggcaggaactcacagcagtattcatgaaaaactgcatgctgcattacgccatgtttagagatatattcccaatgtgggctctagctgaatatcgtaaag 5686117  T
Q  230 gggttccattgccttccactgcagttt 256  Q
    || ||   |||||||||| ||||||||    
T  5686116 ggattatgttgccttccattgcagttt 5686090  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 5638300 - 5638186
Alignment:
Q  121 ttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagt 220  Q
    |||| ||| ||||||||| | ||||| | || | |||||| ||| ||||||||||| |||||||||||||||| ||  ||  ||| ||||||||| || |    
T  5638300 ttttttttttggcaggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaat 5638201  T
Q  221 atcgtagacgggttc 235  Q
    |||||| ||||||||    
T  5638200 atcgtaaacgggttc 5638186  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 5651498 - 5651384
Alignment:
Q  121 ttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagt 220  Q
    |||| ||| ||||||||| | ||||| | || | |||||| ||| ||||||||||| |||||||||||||||| ||  ||  ||| ||||||||| || |    
T  5651498 ttttttttttggcaggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaat 5651399  T
Q  221 atcgtagacgggttc 235  Q
    |||||| ||||||||    
T  5651398 atcgtaaacgggttc 5651384  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 5602090 - 5602170
Alignment:
Q  155 tgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagacgggttc 235  Q
    |||||| ||| ||||||||||| |||||||||||||||| ||  ||  ||| ||||||||| || ||||||| ||||||||    
T  5602090 tgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgggttc 5602170  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 5602676 - 5602756
Alignment:
Q  155 tgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagacgggttc 235  Q
    |||||| ||| ||||||||||| |||||||||||||||| ||  ||  ||| ||||||||| || ||||||| ||||||||    
T  5602676 tgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgggttc 5602756  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 5602938 - 5603018
Alignment:
Q  155 tgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagacgggttc 235  Q
    |||||| ||| ||||||||||| |||||||||||||||| ||  ||  ||| ||||||||| || ||||||| ||||||||    
T  5602938 tgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgggttc 5603018  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 5632432 - 5632352
Alignment:
Q  155 tgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagacgggttc 235  Q
    |||||| ||| ||||||||||| |||||||||||||||| ||  ||  ||| ||||||||| || ||||||| ||||||||    
T  5632432 tgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgggttc 5632352  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 5638530 - 5638450
Alignment:
Q  155 tgaaaaattgtatgttgcattacccaatgtatagagatatttaccccttgtgggctctagccgagtatcgtagacgggttc 235  Q
    |||||| ||| ||||||||||| |||||||||||||||| ||  ||  ||| ||||||||| || ||||||| ||||||||    
T  5638530 tgaaaacttgcatgttgcattatccaatgtatagagataattttccaatgttggctctagctgaatatcgtaaacgggttc 5638450  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 12135023 - 12134959
Alignment:
Q  132 gcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatattt 196  Q
    ||||||||||||||||  | || |||||||||||||||||||||| |||||||||||| ||||||    
T  12135023 gcaggaaatcacaggatcaatcgtgaaaaattgtatgttgcattatccaatgtatagaaatattt 12134959  T

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