View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_low_44 (Length: 262)

Name: NF16668_low_44
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_low_44
NF16668_low_44
[»] chr7 (14 HSPs)
chr7 (16-246)||(26192222-26192452)
chr7 (112-246)||(26180040-26180174)
chr7 (117-246)||(26278653-26278782)
chr7 (78-246)||(26121272-26121440)
chr7 (78-246)||(26129527-26129695)
chr7 (78-246)||(19102569-19102737)
chr7 (122-246)||(26243357-26243481)
chr7 (115-242)||(26156152-26156279)
chr7 (111-246)||(26251805-26251940)
chr7 (117-246)||(26298405-26298534)
chr7 (130-246)||(26204842-26204958)
chr7 (130-241)||(26224484-26224595)
chr7 (189-246)||(26302766-26302823)
chr7 (130-245)||(26260830-26260945)
[»] chr4 (1 HSPs)
chr4 (111-246)||(44904210-44904345)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 26192452 - 26192222
Alignment:
Q  16 caaaaagtagctggagagaaaaacttggatgttgtttcatcatattcaaagccttaatcagctactccttcatttcaattctctagtctgccgagtcacc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26192452 caaaaagtagctggagagaaaaacttggatgttgtttcatcatattcaaagccttaatcagctactccttcatttcaattctctagtctgctgagtcacc 26192353  T
Q  116 aagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26192352 aagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtatgaatgtccaccttcctctatagtcctcttggaagcatca 26192253  T
Q  216 ccaagtttctttgctctcatcctcatttctt 246  Q
    |||||||||||||||||||||||||||||||    
T  26192252 ccaagtttctttgctctcatcctcatttctt 26192222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 26180174 - 26180040
Alignment:
Q  112 caccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagc 211  Q
    |||||||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  26180174 caccaagtgccttagatttctttaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggaagc 26180075  T
Q  212 atcaccaagtttctttgctctcatcctcatttctt 246  Q
    |||||||||||||||||||||||||||||||||||    
T  26180074 atcaccaagtttctttgctctcatcctcatttctt 26180040  T

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Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 26278782 - 26278653
Alignment:
Q  117 agtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcac 216  Q
    ||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  26278782 agtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagagtgtccaccttcctctatagtcctcttggcagcatcac 26278683  T
Q  217 caagtttctttgctctcatcctcatttctt 246  Q
    ||||||||||||||||||||||||||||||    
T  26278682 caagtttctttgctctcatcctcatttctt 26278653  T

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Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 78 - 246
Target Start/End: Complemental strand, 26121440 - 26121272
Alignment:
Q  78 tactccttcatttcaattctctagtctgccgagtcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaag 177  Q
    ||||||||||||| | || |||| |||||    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26121440 tactccttcatttgacttatctaatctgctttctcaccaagtgctttagatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaag 26121341  T
Q  178 aatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 246  Q
    ||||||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  26121340 aatgtccacgttcctctataatcctcttggcagcctcaccaagtttctttgctctcatcatcatttctt 26121272  T

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Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 246
Target Start/End: Complemental strand, 26129695 - 26129527
Alignment:
Q  78 tactccttcatttcaattctctagtctgccgagtcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaag 177  Q
    ||||||||||||| | || |||| |||||    ||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||    
T  26129695 tactccttcatttgacttatctaatctgctttctcaccaagtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaag 26129596  T
Q  178 aatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 246  Q
    ||| |||||||||||| ||||||||||||| ||| |||||||| || ||||||||||||||||||||||    
T  26129595 aatctccaccttcctcaatagtcctcttggcagcctcaccaagcttttttgctctcatcctcatttctt 26129527  T

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Target: chr7; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 78 - 246
Target Start/End: Original strand, 19102569 - 19102737
Alignment:
Q  78 tactccttcatttcaattctctagtctgccgagtcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaag 177  Q
    ||||||||||||| |||| |||| |||||    ||||||||||  ||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||    
T  19102569 tactccttcatttgaattatctaatctgctttctcaccaagtgacttagatttcttcaatgatttcagctcatcaatcaacagaatcaagttgttgtgag 19102668  T
Q  178 aatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 246  Q
    | |||||||| ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  19102669 agtgtccaccctcctctatagtcctctttgcagcatcaccaagcttctttgctctcatcctcatttctt 19102737  T

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Target: chr7; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 26243481 - 26243357
Alignment:
Q  122 tttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagt 221  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||    
T  26243481 tttagatttcttcaacgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccctcctctatagtccttttggcagcatcaccaagt 26243382  T
Q  222 ttctttgctctcatcctcatttctt 246  Q
    |||||||||||||||||||||||||    
T  26243381 ttctttgctctcatcctcatttctt 26243357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 26156279 - 26156152
Alignment:
Q  115 caagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatc 214  Q
    |||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  26156279 caagtggtttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcatc 26156180  T
Q  215 accaagtttctttgctctcatcctcatt 242  Q
    |||||||||||||||||||| |||||||    
T  26156179 accaagtttctttgctctcaccctcatt 26156152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 26251940 - 26251805
Alignment:
Q  111 tcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaag 210  Q
    |||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||  |    
T  26251940 tcaccaagcgctttatatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatcgtccttttggctg 26251841  T
Q  211 catcaccaagtttctttgctctcatcctcatttctt 246  Q
    |||| |||||||||||||||||||||||||||||||    
T  26251840 catcgccaagtttctttgctctcatcctcatttctt 26251805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 117 - 246
Target Start/End: Complemental strand, 26298534 - 26298405
Alignment:
Q  117 agtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcac 216  Q
    ||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||| ||| || |    
T  26298534 agtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcctcgc 26298435  T
Q  217 caagtttctttgctctcatcctcatttctt 246  Q
     |||||||||||||||||||||||||||||    
T  26298434 taagtttctttgctctcatcctcatttctt 26298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 26204958 - 26204842
Alignment:
Q  130 tcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgc 229  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  26204958 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcttcttggcagcatcaccaagcttctttgc 26204859  T
Q  230 tctcatcctcatttctt 246  Q
    |||||||||||||||||    
T  26204858 tctcatcctcatttctt 26204842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 26224595 - 26224484
Alignment:
Q  130 tcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgc 229  Q
    |||||| |||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||||| ||||||||    
T  26224595 tcttcaatgattttagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctctatagtcttctttgcagcatcaccaagcttctttgc 26224496  T
Q  230 tctcatcctcat 241  Q
    ||||||||||||    
T  26224495 tctcatcctcat 26224484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 26302823 - 26302766
Alignment:
Q  189 tcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 246  Q
    |||||||||||||||||||||||| ||||||| || || ||| || ||||||||||||    
T  26302823 tcctctatagtcctcttggaagcagcaccaagatttttagctttcttcctcatttctt 26302766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 26260945 - 26260830
Alignment:
Q  130 tcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgc 229  Q
    |||||| |||||| |||||||| || || || ||||| |||||||||||   |||||| ||||||||  || |||| |  ||||||| ||||||  ||||    
T  26260945 tcttcaatgatttaagctcatctataaattgcatcaaattgttgtaagaggttccaccctcctctatgctcttcttagctgcatcacaaagttttcttgc 26260846  T
Q  230 tctcatcctcatttct 245  Q
    |||| |||||||||||    
T  26260845 tctcctcctcatttct 26260830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 44904345 - 44904210
Alignment:
Q  111 tcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaag 210  Q
    |||||||||||||| |||||||||| ||||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||    
T  44904345 tcaccaagtgctttggatttcttcaatgatttcagctcatctatcaactgaaccaagttgttgtaagagtgtccaccttcctctatagtcctcttggcag 44904246  T
Q  211 catcaccaagtttctttgctctcatcctcatttctt 246  Q
    |||| ||||  || ||||||||| ||||||||||||    
T  44904245 catcgccaaacttttttgctctcgtcctcatttctt 44904210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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