View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_46 (Length: 259)
Name: NF16668_low_46
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 52590312 - 52590088
Alignment:
| Q |
17 |
aataataataataatcagacattggtttcttcttcacagagtactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggca |
116 |
Q |
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| T |
52590312 |
aataataataataatcagacattggtttcttcttcacagagtactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggca |
52590213 |
T |
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| Q |
117 |
atactcatctgttgcatgaatttgtcgtatgaaaatctaccaaagatannnnnnnnnnnnnnactaaaggtatcttatctctgaaaggtgtacttcctca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52590212 |
atactcatctgttgcatgaatttgtcgtatgaaaatctaccaaagata-tttttcattttttactaaaggtatcttatctctgaaaggtgtacttcctca |
52590114 |
T |
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| Q |
217 |
aaccatatgctgttgttttttaattc |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52590113 |
aaccatatgctgttgttttttaattc |
52590088 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 7301149 - 7301066
Alignment:
| Q |
58 |
tactgatttactagactatcatttcacagattcaggaaagcaacaacacatgtttggcaatactcatctgttgcatgaatttgt |
141 |
Q |
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||||||||| |||||||||| |||||||| | |||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |
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| T |
7301149 |
tactgatttgttagactatcacttcacagacactggaaagcaacaacacaagtttgccaaccctcatttgttacatgagtttgt |
7301066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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