View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_49 (Length: 250)
Name: NF16668_low_49
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_49 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 4751319 - 4751089
Alignment:
| Q |
20 |
atattaccattgaaattaactcaactaaaatttccttaataatcgcacacaactctaaaacgaccattaaaatgagacggagggaggaattttatttgct |
119 |
Q |
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| T |
4751319 |
atattaccattgaaataaactcaactaaaatttccttaataatcgcacacaactctaaaacgaccattaaaatgagacggagggaggaattttatttgct |
4751220 |
T |
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| Q |
120 |
cttaaacctaaaatttgatttgcatgtcataacaatgtttattttataatgttgttacgtttatgaccattcacacactttaatttaaataatttgtcct |
219 |
Q |
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| T |
4751219 |
cttaagcctaaaatttaatttgcatgtcataacaatttttattttataatgttattacgtttatgaccattcgcacactttaatttaaataatttgtcct |
4751120 |
T |
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| Q |
220 |
ttaaactttcttggcaagcatggaacgtatt |
250 |
Q |
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| T |
4751119 |
ttaaactttcttggcaagcatagaacgtatt |
4751089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 4730595 - 4730511
Alignment:
| Q |
157 |
tttattttataatgttgttacgtttatgaccattcacacactttaatttaaataat-ttgtcctttaaactttcttggcaagcat |
240 |
Q |
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| T |
4730595 |
tttattttataatgttgttacgtttatgacttgtctcacactttaatttaaataatgttgtcctttgaacttcctaggcatgcat |
4730511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 4734414 - 4734297
Alignment:
| Q |
107 |
aattttatttgctcttaaacctaaaatttgatttgcatgtcataacaatgtttattttataatgttgttacgtttatgaccattcacacactttaattta |
206 |
Q |
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| T |
4734414 |
aattttatttccttttaaacataaaattttatgtgcacgacatatca--gtttattttataatgttgttacgtttatga--tttgtctcactttaattta |
4734319 |
T |
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| Q |
207 |
aataat-ttgtcctttaaactt |
227 |
Q |
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| T |
4734318 |
aataatgttgtcctttgaactt |
4734297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 4744753 - 4744668
Alignment:
| Q |
49 |
atttccttaataatcgcacacaactctaaaacgaccattaaaatgagacggagggaggaattttatttgctcttaaacctaaaatt |
134 |
Q |
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| T |
4744753 |
atttctttgataaccgcacacaactctataacgactattaaaatgagacggaaaaaacaattttatttgctcttaagcctgaaatt |
4744668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 37988920 - 37988879
Alignment:
| Q |
67 |
cacaactctaaaacgaccattaaaatgagacggagggaggaa |
108 |
Q |
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| T |
37988920 |
cacaactctaaaacgactattaaaatgagacgaatggaggaa |
37988879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 4744377 - 4744317
Alignment:
| Q |
191 |
cacacactttaatttaaataat-ttgtcctttaaactttcttggcaagcatggaacgtatt |
250 |
Q |
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| T |
4744377 |
cacacactttagtttaaataatgttgtcctttgaacttccttgacaagcatagaaagtatt |
4744317 |
T |
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