View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_5 (Length: 563)
Name: NF16668_low_5
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 528
Target Start/End: Complemental strand, 21095380 - 21094866
Alignment:
| Q |
16 |
atatatattatt-tgaggttatgtaagtcatgattttaattaataagtattaataatgtttgatcatcttcaattcacacatccatgtccttcacttcaa |
114 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21095380 |
atatatattattatgaggttatgtaagtcatggttttaattaataagtattgataatgtttgatcatcttcaattcacacatccatgtccttcacttcaa |
21095281 |
T |
|
| Q |
115 |
atgaaaagattcttatttcatcattagaatatnnnnnnntgaagcatttattatattcacgacttgaaccaccatttaattaattaaattgaaaaacata |
214 |
Q |
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| T |
21095280 |
atcaaaagattcttatttcatcattagaata-caaaaaatgaagcatttattatattcacgacttgaaccaccattttattaattaaattgaaaaacata |
21095182 |
T |
|
| Q |
215 |
atcacttttgtgtacctaattagaataggacaaattgaaaaagtttcagcttgacatttggatgagaaaggttttaacaaacctcatctaagccaaagga |
314 |
Q |
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| T |
21095181 |
atcacttttgtgtacctaattagaataggacaaattgaaaaagtttcagcttgacatttggatgagaaaggttttaacaaacctcatctaagccaaagga |
21095082 |
T |
|
| Q |
315 |
tatcttgtattggttgcaacggcacaatcaaacttgtcggattgtagcttatgatttgtgtaagtacaaagggccattatcactgtgaaatgacatgaaa |
414 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
21095081 |
tatcttgtattgggtgcaatggcacaatcaaacttgtcggattgtagcttatgatttgtgtgagtacaaagggccattatcactgtgaaatgacattaaa |
21094982 |
T |
|
| Q |
415 |
tttgtaaagatttttgaat----ttgatatcactgcatgttgataatttgcatgaggattcagtgaatgttatccatccctatagcatgtgttagcaaga |
510 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
21094981 |
tttgtaaagatttttgaatctgatcgatatcactgcatgttgataatttgcatgagaattcagtggatgttatccatccctatagca--tgttagcaaga |
21094884 |
T |
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| Q |
511 |
ctaccattcattttgcac |
528 |
Q |
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|||||||||||||||||| |
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| T |
21094883 |
ctaccattcattttgcac |
21094866 |
T |
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