View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_52 (Length: 229)
Name: NF16668_low_52
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 7087131 - 7087341
Alignment:
| Q |
1 |
aggttctatttggataaacaactaattaatcgtgtatatatcattggcgtttaatcgtttatcatatacgtgtttatgtacaacattttctataacaaaa |
100 |
Q |
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| T |
7087131 |
aggttctatttggataaacaactaattaatcgtgtatatatcattagcgtttaatcgtttatcatatacgtgtttatgtacaacattttctataacaaaa |
7087230 |
T |
|
| Q |
101 |
gaaaaactcgaactatttttgtgtaagttaaaagctgtttcataagctagtctgatgcgcttatggaagtaaatgaaaacagctcataaacttaggcggc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7087231 |
gaaaaactcgaactgtttttgtgtaagttaaaagctgtttcataagctagtctgatgcgcttatggaagtaaatgaaaacagctcataaacttaggcggc |
7087330 |
T |
|
| Q |
201 |
ggagtttaaat |
211 |
Q |
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||||||||||| |
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| T |
7087331 |
ggagtttaaat |
7087341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 8805297 - 8805087
Alignment:
| Q |
1 |
aggttctatttggataaacaactaattaatcgtgtatatatcattggcgtttaatcgtttatcatatacgtgtttatgtacaacattttctataacaaaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8805297 |
aggttctatttggataaacaactaattaatcgtgtatatatcattagcgtttaatcgtttatcatatacgtgtttatgtacaacattttctataacaaaa |
8805198 |
T |
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| Q |
101 |
gaaaaactcgaactatttttgtgtaagttaaaagctgtttcataagctagtctgatgcgcttatggaagtaaatgaaaacagctcataaacttaggcggc |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8805197 |
gaaaaactcgaactgtttttgtgtaagttaaaagctgtttcataagctagtctgatgagcttatggaagtaaatgaaaacagctcataaacttaggcggc |
8805098 |
T |
|
| Q |
201 |
ggagtttaaat |
211 |
Q |
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||||||||||| |
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| T |
8805097 |
ggagtttaaat |
8805087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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