View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_55 (Length: 222)
Name: NF16668_low_55
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 33532739 - 33532552
Alignment:
| Q |
15 |
caaaggcagttatagaacaaggtcaatcctcaaaaatcttatgtggtatatgctttgattctgtaacagactctaacatgttttcaactggctcatgcaa |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33532739 |
caaagacagttatagaacaaggtcaatcctcaaaaatcttctgtggtatatgctttgattctgtaacagactctaacatgttttcaactggct---gcaa |
33532643 |
T |
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| Q |
115 |
tcattccttttgtactaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccagaatgt |
205 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33532642 |
tcatcccttttgtactaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccagaatgt |
33532552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 26103954 - 26104085
Alignment:
| Q |
23 |
gttatagaacaaggtcaatcctcaaaaatctta---tgtggtatatgctttgattctgtaacagactctaacatgttttcaactggctcatgcaatcatt |
119 |
Q |
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||||| ||||||||| |||||||||||| ||| || |||||||||||||||||||||| | || |||| ||||| | || | |||||||||||| |
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| T |
26103954 |
gttatggaacaaggtgaatcctcaaaaagctttaactgcggtatatgctttgattctgtaaaaaacactaatatgttcactgctagttcatgcaatcatc |
26104053 |
T |
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| Q |
120 |
ccttttgtactaaatgcatatgcaagtatgtg |
151 |
Q |
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| T |
26104054 |
cattttgtactaattgcatatccaagtatgtg |
26104085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 16868608 - 16868795
Alignment:
| Q |
15 |
caaaggcagttatagaacaaggtcaatcctcaaaaatcttatgtggtatatgctttgattctgtaacagactctaacatgttttcaactggctcatgcaa |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16868608 |
caaagacagttatagaacaaggtcaatcctcaaaaatcttctgtggtatatgctttgattctgtaacagactctaacatgttttcaactggct---gcaa |
16868704 |
T |
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| Q |
115 |
tcattccttttgtactaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccagaatgt |
205 |
Q |
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| T |
16868705 |
tcatcccttttgtactaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccagaatgt |
16868795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 24990621 - 24990811
Alignment:
| Q |
15 |
caaaggcagttatagaacaaggtcaatcctcaaaaatcttatgtggtatatgctttgattctgtaacagactctaacatgttttcaactggctcatgcaa |
114 |
Q |
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||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| || | |||||| |
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| T |
24990621 |
caaagacagctatagaacaaggtcaatcctctaaaatctgttgtggtatatgctttgattctgtaacaaactctaatatgttttcaaccggtttatgcaa |
24990720 |
T |
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| Q |
115 |
tcattccttttgtactaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccagaatgt |
205 |
Q |
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|||| ||||||||||||| ||||||| |||||||||||||| | |||||| |||||||||||| ||| | || ||||| |||||||||||| |
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| T |
24990721 |
tcatcccttttgtactaagtgcatatccaagtatgtgaagatttaaataaaagaaaaagtggttaaaatcaagtgtccggatccagaatgt |
24990811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 25014158 - 25014348
Alignment:
| Q |
15 |
caaaggcagttatagaacaaggtcaatcctcaaaaatcttatgtggtatatgctttgattctgtaacagactctaacatgttttcaactggctcatgcaa |
114 |
Q |
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||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| || | |||||| |
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| T |
25014158 |
caaagacagctatagaacaaggtcaatcctctaaaatctgttgtggtatatgctttgattctgtaacaaactctaatatgttttcaaccggtttatgcaa |
25014257 |
T |
|
| Q |
115 |
tcattccttttgtactaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccagaatgt |
205 |
Q |
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|||| ||||||||||||| ||||||| |||||||||||||| | |||||| |||||||||||| ||| | || ||||| |||||||||||| |
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| T |
25014258 |
tcatcccttttgtactaagtgcatatccaagtatgtgaagattgaaataaaagaaaaagtggttaaaatcaagtgtccggatccagaatgt |
25014348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 24972193 - 24972020
Alignment:
| Q |
32 |
caaggtcaatcctcaaaaatcttatgtggtatatgctttgattctgtaacagactctaacatgttttcaactggctcatgcaatcattccttttgtacta |
131 |
Q |
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|||| |||||||||||||| |||||| |||||||| |||||||||||| ||||||||| || || ||||||| ||||||||||| |||||||||||| |
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| T |
24972193 |
caagctcaatcctcaaaaagcttatgcggtatatgtcttgattctgtaatagactctaaaatattcgcaactggttcatgcaatcaccccttttgtacta |
24972094 |
T |
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| Q |
132 |
aatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccagaatgt |
205 |
Q |
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| T |
24972093 |
agtgcatatccaagaatgcgaaagttcaaagaaaagaaaaaatggtgaaagtgaagtgtccggatccagaatgt |
24972020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 25013063 - 25013230
Alignment:
| Q |
29 |
gaacaaggtcaatcctcaaaaatcttatgtggtatatgctttgattctgtaacagactctaacatgttttcaactggctcatgcaatcattccttttgta |
128 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||| || | |||||||||| ||||||||| |
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| T |
25013063 |
gaacaaggccaatcctcaaaaatcttctgtggtatatgctt---------aacaaactctaatatgttttcaaccggtttatgcaatcatcccttttgta |
25013153 |
T |
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| Q |
129 |
ctaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccagaatgt |
205 |
Q |
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||| | |||||| |||||||| |||| |||||||| ||||||||| |||||| |||| || || |||||||||||| |
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| T |
25013154 |
ctataagcatatccaagtatgcaaagattcaaataaaagaaaaagttgtgaaagtgaagtgcccagatccagaatgt |
25013230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 25027012 - 25027184
Alignment:
| Q |
32 |
caaggtcaatcctcaaaaatctta---tgtggtatatgctttgattctgtaacagactctaacatgttttcaactggctcatgcaatcattccttttgta |
128 |
Q |
| |
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|||||||||||||| |||| ||| |||||||||||||||||||||||||||| |||||| ||||| |||| | |||||||||||| ||||||||| |
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| T |
25027012 |
caaggtcaatcctcgaaaagcttcagctgtggtatatgctttgattctgtaacagtctctaaaatgttcacaacaagttcatgcaatcatcccttttgta |
25027111 |
T |
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| Q |
129 |
ctaaatgcatatgcaagtatgtgaagaatcaaataacagaaaaagtggtgaaactgaattgtcctgatccaga |
201 |
Q |
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|||| ||||||| || ||||||| | ||| | || |||||| ||||||||||| |||||||| ||||||| |
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| T |
25027112 |
ctaattgcatatccatgtatgtggatgttcagagaaaagaaaacgtggtgaaactaaattgtccaaatccaga |
25027184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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