View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_59 (Length: 206)
Name: NF16668_low_59
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 38422803 - 38422977
Alignment:
| Q |
15 |
aacctgtgattgcattgaataggaggaagttagaaaaatggtacaaattgtagataaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggt |
114 |
Q |
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| T |
38422803 |
aacctgtgattgcattgaataggaggaagttagaaaaatggtacaaattgtagataaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggt |
38422902 |
T |
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| Q |
115 |
gagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagt |
189 |
Q |
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| T |
38422903 |
gagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttccatgaatgaaacaggcaaagt |
38422977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 38412971 - 38413090
Alignment:
| Q |
70 |
aaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggtgagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaacatcttcc |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38412971 |
aaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggtgagaacaagaacaacagcctcaaaggcagagacaaccttaaaaacaatatcttcc |
38413070 |
T |
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| Q |
170 |
atgaatgaaacaggcaaagt |
189 |
Q |
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| T |
38413071 |
atgaatgaaaccggcgaagt |
38413090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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