View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_6 (Length: 561)
Name: NF16668_low_6
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Complemental strand, 45864385 - 45863850
Alignment:
| Q |
17 |
tcaggaggtggttaataggggatttgacaagaatcaattgattgagtcccttagcaacagggtgcaaaatgaggtttgttccattcattttcacattaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45864385 |
tcaggaggtggttaataggggatttgacaagaatcaattgattgagtcccttagcaacagggtgcaaaatgaggtttgttccattcattttcacattaca |
45864286 |
T |
|
| Q |
117 |
tacctgcctgccagattgcttcttattaccatcaattttatttcagggtactgtaacttactatttgttattggacaatcgtttttgtgtttccactggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45864285 |
tacctgcctgccagattgcttcttattaccatcaattttatttcagggtactgtaacttactatttgttattggacaatcgtttttgtgtttccactggc |
45864186 |
T |
|
| Q |
217 |
tattttggagctgaatttcaagagacaaatgtgagtttgattcctcttcaattacttacaatttcattagctgtctatctttgaagtgattcggttattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45864185 |
tattttggagctgaatttcaagagacaaatgtgagtttgattcctcttcaattacttacaatttcattagatgtctatctttgaagtgattcggttattt |
45864086 |
T |
|
| Q |
317 |
agcttatattttatagtgataagaaacatttttaagttacttttaaattgtatccccgcgtgaagtgcgttacagtctcaaaaatgcctgttaatagtat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45864085 |
agcttatattttatagtgataagaaacatttttaagttacttttaaattgtatccccgcgtgaagtgcgtt--agtctcaaaaatgcctgttaatagtat |
45863988 |
T |
|
| Q |
417 |
attcccatgagtaaatcgc--------actcatctttatagtagttgtttttgcagtattttaccatggaaatagtgtgttttctcaatgatattggttt |
508 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45863987 |
attcccatgagtaaatcgcacagtgaaactcatctttatagtagttgtttttgcagtattttaccatggaaatagtgtgttttctcaatgatattggttt |
45863888 |
T |
|
| Q |
509 |
tatgatacgactactcaggattctagcttgaaccatat |
546 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
45863887 |
tatgatacgactactcaggattctagcttgaaccatat |
45863850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 17406086 - 17406440
Alignment:
| Q |
17 |
tcaggaggtggttaataggggatttgacaagaatcaattgattgagtcccttagcaacagggtgcaaaatgaggtttgttccattcattttcacattaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||| | | | | |||| |||||||||||| || ||| | ||||| ||||||||| ||||||||||| || | | |
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| T |
17406086 |
tcaggaggtggttaataggggatttgaaagggaaccattggttgagtcccttaagaataggatacaaaacgaggtttgtgccattcattttgacctg-ct |
17406184 |
T |
|
| Q |
117 |
tacctgcctgccagattgcttcttattaccatcaattttatttcagggtactgtaacttactatttgttattggacaatcgtttttgtgtttccactggc |
216 |
Q |
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||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||| |
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| T |
17406185 |
tacctgccttccagattgcttcttattactatcaattt-atttcagggtactgtaacttactatttgttgttggacaatcgttatcgtgtttccaccggc |
17406283 |
T |
|
| Q |
217 |
tattttggagctgaatttcaagagacaaatgtgagtttgattcctcttcaattacttacaatttcattagctgtctatctt---tgaagtgattcggtta |
313 |
Q |
| |
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||| |||||||||| ||||||||||||| || ||||| || ||||||||||||| |||||||||| || ||||| |||| ||||| |||| |||| |
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| T |
17406284 |
tatcttggagctgagtttcaagagacaatggtcggtttgttttctcttcaattactgacaatttcataagttgtctgtctttaatgaagcaattcagtta |
17406383 |
T |
|
| Q |
314 |
tttagcttatattttatag-tgataagaaacatttttaagttacttttaaattgtat |
369 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||||| |||||||||||| |||| |
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|
| T |
17406384 |
tttagcttatatcttatagttgataagacacatttttaacttacttttaaatcgtat |
17406440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 4051600 - 4051315
Alignment:
| Q |
17 |
tcaggaggtggttaataggggatttgacaagaatcaattgattgagtcccttagcaacagggtgcaaaatgaggtttgttccattcattttcacat---- |
112 |
Q |
| |
|
|||||||||||||||||||||||||| | | | | |||| |||| ||||||| |||||||| ||||||||||||||| | |||||||||||||| |
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| T |
4051600 |
tcaggaggtggttaataggggatttgctagggaaccattggttgactcccttaagaacagggtacaaaatgaggtttgtccaattcattttcacatagac |
4051501 |
T |
|
| Q |
113 |
---tacatacctgcctgccagattgcttcttattacc---atcaattttatttcagggtactgtaacttactatttgttattggacaatcgtttttgtgt |
206 |
Q |
| |
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||| ||||||||||| |||||||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||| |||| | |||| |
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| T |
4051500 |
acatacttacctgcctgctagattgcttcttattacctgcatcaattt-atttcagggtaccgtgacttactatttgttattggacaaccgttatcgtgt |
4051402 |
T |
|
| Q |
207 |
ttccactggctattttggagctgaatttcaagagacaaatgtgagtttgattcctcttcaattactt-acaatttcattagctgtct |
292 |
Q |
| |
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|||||||||||| | || ||||| ||||||||||||| || ||||| || |||||||||||||| ||||||| ||||| ||||| |
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| T |
4051401 |
ctccactggctatctcggtgctgagtttcaagagacaatggtcggtttgttttctcttcaattacttaacaattttattagttgtct |
4051315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 3576175 - 3576138
Alignment:
| Q |
343 |
catttttaagttacttttaaattgtatccccgcgtgaa |
380 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||| |
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| T |
3576175 |
catttttaacttacttttaaattgtatccccgtgtgaa |
3576138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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