View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_low_7 (Length: 510)

Name: NF16668_low_7
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_low_7
NF16668_low_7
[»] chr8 (2 HSPs)
chr8 (134-481)||(18529295-18529627)
chr8 (18-105)||(18529039-18529126)
[»] chr4 (1 HSPs)
chr4 (365-432)||(13929799-13929864)
[»] chr6 (1 HSPs)
chr6 (369-413)||(12041058-12041103)
[»] chr7 (1 HSPs)
chr7 (370-410)||(9553005-9553045)
[»] chr5 (1 HSPs)
chr5 (369-413)||(30742140-30742184)
[»] chr1 (1 HSPs)
chr1 (364-400)||(12396963-12396999)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 134 - 481
Target Start/End: Original strand, 18529295 - 18529627
Alignment:
Q  134 cgtgcattttagataatttattcatggaaaattccatgatagctcctagttatatgcgcttcataagtatcattctgctaatttggaaac-----atcgc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     |||||    
T  18529295 cgtgcattttagataatttattcatggaaaattccatgatagctcctagttatatgcgcttcataagtatcattctgctcatttggaaaccaaacatcgc 18529394  T
Q  229 cagaaatagtgtattaattctaaattaagattgagcactaactaatatggaaataagaatcatacactattgactttttgttggagaactacgacatgaa 328  Q
    |||||| |||| ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18529395 cagaaacagtgcattaattctaaattaagattgagcacta----atatggaaataagaatcatacactattgactttttgttggagaactacggcatgaa 18529490  T
Q  329 attatagttagagaatgttttgcacaattcacaatcgaaagtgagaaaaacacaagaagatggttgaattgtattgacattttctaaaaa-cttttgtaa 427  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||                 |||||||||| ||||| |||    
T  18529491 attatagttagagaatgttttgcacaactcacaattgaaagtgagaaaaacaaaagaagatgg-----------------tttctaaaaaccttttataa 18529573  T
Q  428 gtgtttttcataatcagagtaagcaataagagaatgaaagataaacactgagtc 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18529574 gtgtttttcataatcagagtaagcaataagagaatgaaagataaacactgagtc 18529627  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 18529039 - 18529126
Alignment:
Q  18 aatggttggggcaaaaagtgaactgttctattaatttagcctccatagctaacattcttgattgcatcctagtccattgcaactctca 105  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18529039 aatggttggggcaaaaagtgaattgttctattaatttagcctccatagctaacattcttgattgcatcctagtccattgcaactctca 18529126  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 432
Target Start/End: Complemental strand, 13929864 - 13929799
Alignment:
Q  365 gaaagtgagaaaaacacaagaagatggttgaattgtattgacattttctaaaaacttttgtaagtgtt 432  Q
    |||||||||||||||||||||||  ||||||||||| || ||  ||| ||||||||||| ||||||||    
T  13929864 gaaagtgagaaaaacacaagaagggggttgaattgtgttaac--tttttaaaaacttttctaagtgtt 13929799  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 12041058 - 12041103
Alignment:
Q  369 gtgagaaaaacacaagaaga-tggttgaattgtattgacattttct 413  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||||    
T  12041058 gtgagaaaaacacaagaagagtggttgaattgtgttgactttttct 12041103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 9553005 - 9553045
Alignment:
Q  370 tgagaaaaacacaagaagatggttgaattgtattgacattt 410  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  9553005 tgagaaaaacacaagaaaatggttgaattgtgttggcattt 9553045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 30742140 - 30742184
Alignment:
Q  369 gtgagaaaaacacaagaagatggttgaattgtattgacattttct 413  Q
    |||||||||||||||||||  ||||||||||| ||||| ||||||    
T  30742140 gtgagaaaaacacaagaagggggttgaattgtgttgactttttct 30742184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 12396963 - 12396999
Alignment:
Q  364 cgaaagtgagaaaaacacaagaagatggttgaattgt 400  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  12396963 cgaaggtgagaaaaacacaagaagatagttgaattgt 12396999  T

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