View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_9 (Length: 485)
Name: NF16668_low_9
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 471
Target Start/End: Complemental strand, 46817819 - 46817355
Alignment:
| Q |
13 |
aatatgtgatgcttaatcaaagtaggtcattttggatgccactttataaacatttaatctaa-----aaatgcttagccaaagcccaaattgtgttctgc |
107 |
Q |
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| T |
46817819 |
aatatgtgatgctaaatcaaagtaggtcattttggatgccactttataaacatttaatttaatttaaaaatgcttagccaaagcccaaattgtgttctgc |
46817720 |
T |
|
| Q |
108 |
agaggccacatcatgcaaatcctacctacttaaatcagttaaactcttacatttcgcattgattagatatggtagttgaacttcttaaccaaccatcata |
207 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46817719 |
agatgccacatcatgcaaatcctacctacttaaatcagttaaactcttacatttcgcattgattagatatggtagttgaacttcttaaccaaccatcata |
46817620 |
T |
|
| Q |
208 |
catactaataatcttcacttctttt-atcaatgtcttctatctataaatccccttttcatcttcctgttctaacacaaccttaacacttccaattccaaa |
306 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46817619 |
catactaataatcttcacttctttttatcaatgtcttctatctataaatccccttttcatcttcctgttctaacacaaccttaacacttccaattccaaa |
46817520 |
T |
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| Q |
307 |
cccaattttacaacttctcttgattctaccaaagtacaaattcctagtacacaattagacatggcaaattatgttgctttatgtcacctagctataatat |
406 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46817519 |
cccaattttacaacttctcttgattctacaaaagtacaaattcctagtacacaattagacatggcaaattctgttgctttatgtcacctagctataatat |
46817420 |
T |
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| Q |
407 |
tggtcattaatattgtcatggctggaccagccaatgcacaaatcaacaccccatgtaatccttct |
471 |
Q |
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| T |
46817419 |
tggtcattaatattgtcatggctggaccagccaatgcacaaatcaacaccccatgtaatccttct |
46817355 |
T |
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