View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16669_high_2 (Length: 760)
Name: NF16669_high_2
Description: NF16669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16669_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 42 - 376
Target Start/End: Original strand, 34365722 - 34366056
Alignment:
| Q |
42 |
atatatacaagttctaagttcttaggtctcataaaccaaactttatattccttaataaatacccttaattgtttgaagatggtgtatacatcatctatga |
141 |
Q |
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| T |
34365722 |
atatatacaagttctaagttcttaggtctcataaaccaaactttatattccttaataaatacccttaattgtttgaagatgatgtatacatcatctatga |
34365821 |
T |
|
| Q |
142 |
agtcattgaaaatggtaatggttaaattgatgacattttttatgctaatagaggtgattacatgccaattcgggttcggattcgggggagggttaaacat |
241 |
Q |
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| T |
34365822 |
agtcattgaaaatggtaatggttaaattgatgacattttttatgctaatagaggtgattacatgccaattcgggttcggattcgggggagggttaaacat |
34365921 |
T |
|
| Q |
242 |
gaactactatttgatgagttgcccttttgttgaaccagttgttaagaacatagtgaatagagctttggacaatgatcccacccttgcagctgctcttata |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34365922 |
gaactactatttgatgagttgcccttttgttgaaccagttgttaagaacatagtgaatagagctttggacaatgatcccacccttgcagctgctcttata |
34366021 |
T |
|
| Q |
342 |
agaatgcacttccatgactgcttcacacaggttct |
376 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
34366022 |
agaatgcacttccatgactgcttcatacaggttct |
34366056 |
T |
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