View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16669_high_5 (Length: 411)
Name: NF16669_high_5
Description: NF16669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16669_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 318
Target Start/End: Original strand, 10842912 - 10843231
Alignment:
| Q |
9 |
gagatgaaactgaaaatgcttgaaccaaagaaaaatttagtggtgtacattt--------atttagtgactattagattagataaaactcatcttcaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10842912 |
gagatgaaactgaaaatgcttgaaccaaagaaaaatttagtggtgtatattttatattttatttagtgactattagattagataaaactcatcttcaagc |
10843011 |
T |
|
| Q |
101 |
actcatcttcactaaccaaaa-actttatggtctgcaatcttttacatacacaagaaagaggcattgacagtgataagtatacttcaccttcaatataca |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10843012 |
actcatcttcactaaccaaaaaactttatggtctgcaatctttttcatacacaagaaagaggcattgacagtgataagtatacttcaccttcaatataca |
10843111 |
T |
|
| Q |
200 |
tccacataataattcataattaaaatcctcaaacgaaaacgatttcgt-gaaggaaagaatccaaaacaataaaaacaagttcttcaacatctatgtgga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10843112 |
tccacataataattcataattaaaatcctcaaacgaaaacgatttcgtcgaaggaaagaatccaaaacaataaaaacaagttcttcaacatctatgtgga |
10843211 |
T |
|
| Q |
299 |
catgaaatttcagagaacaa |
318 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
10843212 |
catgaaatctcagagaacaa |
10843231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 10843231 - 10843273
Alignment:
| Q |
352 |
acattatatatcttttattaatttgtggtccaacataattatc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10843231 |
acattatatatcttttattaatttgtggaccaacataattatc |
10843273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University