View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16669_low_4 (Length: 495)
Name: NF16669_low_4
Description: NF16669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16669_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 68 - 461
Target Start/End: Original strand, 45782852 - 45783223
Alignment:
| Q |
68 |
attttttaaatgtaactgttgattgatggaattactaatttctttcagtaaagtctaggaagtgtggtagtcaagttttgtcataccatacctagcctgc |
167 |
Q |
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| T |
45782852 |
attttttaaatgtaactgttgatttatggaattactaatttctttcggtaaagtctaggaagtgtggtagtcaagttttgtcataccatacctagcct-- |
45782949 |
T |
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| Q |
168 |
ctagggaatgttgcctgacttcactcactcacttgcagtcatagtcatagtcatagtcatagtatcccaatttatttaatacnnnnnnnnnnnncgtaac |
267 |
Q |
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| T |
45782950 |
--agggaatgttgcctgacttcactcact----tgcagtcatagtc------------atagtatcccaatttatttaatacaaaaaaa-----cgtaac |
45783026 |
T |
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| Q |
268 |
aagttgttatatttaattagaacccagnnnnnnnnnnnnnnnnn--tgtact-agtgtattgaatgtaacgggattggaggtggtgaattttgtagttta |
364 |
Q |
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| T |
45783027 |
aagttgttatatttaattagaacccaagaaaataaaaaataaaaaatgtacttagtgtattgaatgtaacgggattggaggtggtgaattttgtagttta |
45783126 |
T |
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| Q |
365 |
gtgattgatattgtgcgtgcttatcccacttgtcttcatttcctaaactatagcatagccttttcatttccactcagctcaacacacacacgcactc |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
45783127 |
gtgattgatattgtgcgtgcttatcccacttgtcttcatttcctaaactatagcatagccttttcatttccactcagctcaacacacgcactcactc |
45783223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 45782604 - 45782658
Alignment:
| Q |
22 |
tagtaccttaaccttaacaaaactcaagtgacatgatctacagcatattttttaa |
76 |
Q |
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| T |
45782604 |
tagtaccttaaccttaacaaaactcaagtgacatgatctacagcatattttttaa |
45782658 |
T |
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