View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16669_low_6 (Length: 314)
Name: NF16669_low_6
Description: NF16669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16669_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 6706008 - 6705769
Alignment:
| Q |
16 |
tgcttctgcataattttaggtgtggttagtgttgagtttaagccatatattacttgaatgtagttgtaggcatcgacttacgaaattagaggtctaaggg |
115 |
Q |
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| T |
6706008 |
tgcttatgcataattttaggtgtggttagtgttgagtttaagccatatattacttgaatgtggttgtaggcatggacttacgaaattagaggtctaaggg |
6705909 |
T |
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| Q |
116 |
aaaacatgtgtggcagaggatcatgtaatgtgtaggttaccttttgtattggcacttttagttgcttgcactcttttagtacctatgatgttgtattatg |
215 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||| |
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| T |
6705908 |
aaaacatgtgtgccagaggatcatgttatgtgtaggttaccttttgttttggcacttttgcttgcttgcactcttttaggacctatgatgttgtgttatg |
6705809 |
T |
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| Q |
216 |
gggaaggtagtgtcttgttacttataagtgttaagattaa |
255 |
Q |
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| T |
6705808 |
gagaaggtagtgtcttgttacttataagtgttaagattaa |
6705769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 6705752 - 6705719
Alignment:
| Q |
272 |
atgtggcagtgagttttgtttgtggtgatgatgt |
305 |
Q |
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| T |
6705752 |
atgtggcggtgagttttgtttgtggtgatgatgt |
6705719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 40900436 - 40900403
Alignment:
| Q |
272 |
atgtggcagtgagttttgtttgtggtgatgatgt |
305 |
Q |
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| T |
40900436 |
atgtggcggtgagttttgtttgtggtgatgatgt |
40900403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 40681400 - 40681145
Alignment:
| Q |
16 |
tgcttctgcataattttaggtgtgg-ttagtgttgagtttaagccatatattacttgaatgtagttgtaggcatcgacttacgaaattagaggtctaagg |
114 |
Q |
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| T |
40681400 |
tgcttctgcataattttaggtgtgggttagtgttgagtttaagccatatattacttgaatgtggttgtaggcatggacttacgaaattagaggtctaagg |
40681301 |
T |
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| Q |
115 |
gaaaacatgt---------------gtggcagaggatcatgtaatgtgtaggttaccttttgtattggcacttttagttgcttgcactcttttagtacct |
199 |
Q |
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| T |
40681300 |
gaaaacatgttaggtggagcaatgtgtggcagaggatcatgttatgtgtaggttaccttttgttttggcatttttggttgcttgcactcttttagtacct |
40681201 |
T |
|
| Q |
200 |
atgatgttgtattatggggaaggtagtgtcttgttacttataagtgttaagattaa |
255 |
Q |
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| T |
40681200 |
atgatgttgtgttatggggaaggtagtgtcttgttacttacaagtgttaagattaa |
40681145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 15496399 - 15496147
Alignment:
| Q |
17 |
gcttctgcataattttaggtgtgg-ttagtgttgagtttaagccatatattacttgaatgtagttgtaggcatcgacttacgaaattagaggtctaaggg |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
15496399 |
gcttctgcataattttaggtgtgggttagtgttgagtttaagccatat--tacttgaatgtggttgtaggcatggacttacgaaattagaggtctaaggg |
15496302 |
T |
|
| Q |
116 |
aaaacatgt---------------gtggcagaggatcatgtaatgtgtaggttaccttttgtattggcacttttagttgcttgcactcttttagtaccta |
200 |
Q |
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||||||||| |||||||||| || ||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
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| T |
15496301 |
aaaacatgttaggtggagcaatgtgtggcagagggtcttgttatgtgtaggttaccttttgttttggcacttttggttgctagcactcttttagtaccta |
15496202 |
T |
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| Q |
201 |
tgatgttgtattatggggaaggtagtgtcttgttacttataagtgttaagattaa |
255 |
Q |
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| T |
15496201 |
tgatgttgtattatggggaaggtagtgtcttgttacttataagtgttaagattaa |
15496147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 15496130 - 15496097
Alignment:
| Q |
272 |
atgtggcagtgagttttgtttgtggtgatgatgt |
305 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
15496130 |
atgtggcggtgagttttgtttgtggtgatgatgt |
15496097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 19603366 - 19603422
Alignment:
| Q |
97 |
gaaattagaggtctaagggaaaacatgtgtggcagaggatcatgtaatgtgtaggtt |
153 |
Q |
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| T |
19603366 |
gaaattagaggtctaagggaaaacatgttaggtggaggatcatgttatgtgtaggtt |
19603422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 19603272 - 19603317
Alignment:
| Q |
16 |
tgcttctgcataattttaggtgt-ggttagtgttgagtttaagccat |
61 |
Q |
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| T |
19603272 |
tgcttctgcataattt-aggtgtcggttagtgttgagtttaagccat |
19603317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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