View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16669_low_7 (Length: 307)
Name: NF16669_low_7
Description: NF16669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16669_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 43065724 - 43065431
Alignment:
| Q |
1 |
atccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactnnnnnnnnnncattacgataatataataatggcatggtaatgttaaa |
100 |
Q |
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| T |
43065724 |
atccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactaaaaaaaa--cattacgataatataataatggcatggtaatgttaaa |
43065627 |
T |
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| Q |
101 |
atgcaagaatgaagtatatatgagaacacagaaccatcgactattttaaaactagcgattcataaatnnnnnnncgataggattcagaattgcgattaaa |
200 |
Q |
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| T |
43065626 |
atgcaagaatgaagtatatatgagaacacagaaccatcaactattttaaaactagcgattcataaataaaaaaacgataggattcagaattgcgattaaa |
43065527 |
T |
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| Q |
201 |
cacgtgcatgaatagaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatgatgat |
296 |
Q |
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| T |
43065526 |
catgtgcatgaatcgaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatgatgat |
43065431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 43047402 - 43047482
Alignment:
| Q |
215 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatgatga |
295 |
Q |
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| T |
43047402 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaattgattatga |
43047482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 43047239 - 43047289
Alignment:
| Q |
74 |
atataataatggcatggtaatgttaaaatgcaagaatgaagtatatatgag |
124 |
Q |
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| T |
43047239 |
atataataatggcatggtaatgttaaaatgcatgaatgaagaatgtatgag |
43047289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 42159055 - 42159107
Alignment:
| Q |
220 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaata |
272 |
Q |
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||||||||||||| |||||||| ||| |||||||||||||| ||||||||| |
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| T |
42159055 |
acaaaagcattattatgtaatcgatcaaagatgtaaagtaaagtacacgaata |
42159107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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