View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16669_low_8 (Length: 284)

Name: NF16669_low_8
Description: NF16669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16669_low_8
NF16669_low_8
[»] chr2 (11 HSPs)
chr2 (1-243)||(9069859-9070101)
chr2 (107-243)||(8575629-8575772)
chr2 (1-90)||(9314621-9314712)
chr2 (1-90)||(9290188-9290279)
chr2 (24-90)||(9063026-9063092)
chr2 (94-196)||(9063290-9063391)
chr2 (94-171)||(9314401-9314478)
chr2 (99-185)||(9063196-9063283)
chr2 (143-196)||(9289902-9289955)
chr2 (21-76)||(8575248-8575304)
chr2 (28-71)||(7610415-7610458)
[»] chr7 (2 HSPs)
chr7 (94-237)||(45218462-45218611)
chr7 (2-91)||(45218644-45218735)
[»] chr8 (1 HSPs)
chr8 (236-270)||(2049182-2049216)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 9069859 - 9070101
Alignment:
Q  1 ttgaagataggattggtcactacttggatatagactatggtggttgccaattgtcaatgttttacttttttatattgctagtcgtaggcttgtgagggta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9069859 ttgaagataggattggtcactacttggatatagactatggtggttgccaattgtcaatgttttacttttttatattgctagtcgtaggcttgtgagggta 9069958  T
Q  101 agcacaaaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatcaacattgc 200  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9069959 agcaccaaatattgtgcttgaagttccagaaattactatagtcaagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatcaacattgc 9070058  T
Q  201 tactaattttttggttcttttctgctatgtgtatgctgttgat 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  9070059 tactaatattttggttcttttctgctatgtgtatgctgttgat 9070101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 8575629 - 8575772
Alignment:
Q  107 aaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatcaaca-------ttg 199  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |||   |||       |||    
T  8575629 aaatattgtgcttgaagttccagaaattactgtaggcaagatcaagtagttaaacaatgtttttgatcgtgtgttgaatcaatagttacaaggaaatttg 8575728  T
Q  200 ctactaattttttggttcttttctgctatgtgtatgctgttgat 243  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  8575729 ctactaattttttggttcttttctgctacgtgtatgctgctgat 8575772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9314712 - 9314621
Alignment:
Q  1 ttgaagataggattggtcact--acttggatatagactatggtggttgccaattgtcaatgttttacttttttatattgctagtcgtaggct 90  Q
    ||||||||||||| |||||||  |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||    
T  9314712 ttgaagataggatcggtcactgtacttggatatagactatggtggctgccaattgtcgatgttttacttttttatattgctggtggtaggct 9314621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9290279 - 9290188
Alignment:
Q  1 ttgaagataggattggtcact--acttggatatagactatggtggttgccaattgtcaatgttttacttttttatattgctagtcgtaggct 90  Q
    ||||| |||||||||||||||  ||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||| | || |||||||    
T  9290279 ttgaaaataggattggtcactgtacttgcatatagactatggtggttgccaattgtcgatgttttaccttttcatattgttggtggtaggct 9290188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 9063026 - 9063092
Alignment:
Q  24 ttggatatagactatggtggttgccaattgtcaatgttttacttttttatattgctagtcgtaggct 90  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| || |||||||    
T  9063026 ttggatatagaccgtggtggttgtcaattgtcaatgttttacttttttatattgctggtggtaggct 9063092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 9063290 - 9063391
Alignment:
Q  94 gagggtaagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatca 193  Q
    |||| ||||||| |||||||||| ||||||||| |||||||||||| | ||| |||||||||||| |||||| ||||| || |||||| |||||||| ||    
T  9063290 gaggttaagcactaaatattgtgtttgaagttccagaaattactattgacaa-atcaagtagttagacaatgcttttggtgatgtgtttaatcgatagca 9063388  T
Q  194 aca 196  Q
    |||    
T  9063389 aca 9063391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 9314478 - 9314401
Alignment:
Q  94 gagggtaagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttg 171  Q
    |||| ||||||| |||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||  |||||||    
T  9314478 gaggttaagcaccaaatattgtgcttgaagttccagaaattgctataggcaagatcacgtagttaaacagcgtttttg 9314401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 9063196 - 9063283
Alignment:
Q  99 taagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatc-aagtagttaaacaatgtttttgatggtgtgttgaat 185  Q
    ||||||| | |||||||||||||||||| ||||||||||||||  || ||| ||||||||| |||||| ||||| || ||||||||||    
T  9063196 taagcactatatattgtgcttgaagttccagaaattactatagataaaatcaaagtagttatacaatgcttttggtgatgtgttgaat 9063283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 9289955 - 9289902
Alignment:
Q  143 caagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatcaaca 196  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  9289955 caagaccaagtagttaaacaatttttttgatggtgtgttgaatcaatagcaaca 9289902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 8575248 - 8575304
Alignment:
Q  21 tacttggatatagactatggtgg-ttgccaattgtcaatgttttacttttttatatt 76  Q
    ||||| ||||||||||||||||| |||| || |||| ||||||||||||||||||||    
T  8575248 tacttagatatagactatggtggtttgctaaatgtcgatgttttacttttttatatt 8575304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 7610458 - 7610415
Alignment:
Q  28 atatagactatggtggttgccaattgtcaatgttttactttttt 71  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||    
T  7610458 atatagactgtggtggttgccaattgtctgtgttttactttttt 7610415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 45218611 - 45218462
Alignment:
Q  94 gagggtaagcacaaaatattgtgcttgaagttctagaaattactatagtcaagatcaagtagttaaacaatgtttttgatggtgtgttgaatcgatatca 193  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||| || || | |||||||||||||||||||||||| ||||||||||||| |||| ||    
T  45218611 gaggttaagcactaaatattgtgcttgaagttccagaaattactacaggcatgttcaagtagttaaacaatgtttttggtggtgtgttgaattgatagca 45218512  T
Q  194 aca-------ttgctactaattttttggttcttttctgctatgtgtatgct 237  Q
    |||       |||||||| ||||| ||||| ||||||||||||||||||||    
T  45218511 acaaggaagtttgctactgattttctggtt-ttttctgctatgtgtatgct 45218462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 45218735 - 45218644
Alignment:
Q  2 tgaagataggattggtcact--acttggatatagactatggtggttgccaattgtcaatgttttacttttttatattgctagtcgtaggctt 91  Q
    |||||||| |||||||| ||  ||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||| || ||||||||    
T  45218735 tgaagatatgattggtcgctgtacttggacatagactgtggtggttgtcaattgtcaatgtttttcttttttatattgctggtggtaggctt 45218644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 2049182 - 2049216
Alignment:
Q  236 ctgttgatcttatccttttccctatccatggaagt 270  Q
    |||||||||||||||||||||||||||||||||||    
T  2049182 ctgttgatcttatccttttccctatccatggaagt 2049216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University