View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16670_high_4 (Length: 355)
Name: NF16670_high_4
Description: NF16670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16670_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 33126866 - 33127189
Alignment:
| Q |
1 |
tcaccaatttcataacatcatgtcaatattataaatgacgtaataaacaacaaaaaacataagtgtttgataaactcacaggccaaacacgttcatagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126866 |
tcaccaatttcataacatcatgtcaatattataaatgacgtaataaacaacaaaaaacataagtgtttgataaactcacaggccaaacacgttcatagga |
33126965 |
T |
|
| Q |
101 |
cgactctccactataccagaagaaacttcnnnnnnncatgacaacaatttctggtttttcgtcttccaaaactctttcggctaaactaacatgatagatc |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33126966 |
cgactctccactataccagaagaaacttgtttttttcatgacaacaatttctggtttttcgtcttccaaaactctttcggctaaactaacgtgatagatc |
33127065 |
T |
|
| Q |
201 |
ataataagactccacgagactagccatataattgttgatacttctcttgatattgccatctttttaacttctaaagccatgtatgaacggtttgaagc-a |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33127066 |
ataataagactccacgagactagccatataattgttgataattctcttgatattgccatctttttaacttctaaagccatgtatgaacggtttgaagcaa |
33127165 |
T |
|
| Q |
300 |
atatttagttaggactctagtatg |
323 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
33127166 |
atatttagttaggactctagtatg |
33127189 |
T |
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