View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16670_high_6 (Length: 346)
Name: NF16670_high_6
Description: NF16670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16670_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 27572327 - 27572572
Alignment:
| Q |
17 |
aaaatacgctcatgtcaactactt----ggtttatttctctataatagcggttctcaccaaatgatcgatgttagatacgtaactttaaaagtctgcttn |
112 |
Q |
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| T |
27572327 |
aaaatacgctcatgttaactacttagttggtttatttctctattatatcggttctcaccaaatgatcgatgttagatacgtaactttaaaagtctgctta |
27572426 |
T |
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| Q |
113 |
nnnnnntagtcttatatagtttattactttgcctattgnnnnnnnnnnnnnnntcaatcgcaaaataatgatttccttattttttaacgtgcatgtagat |
212 |
Q |
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| T |
27572427 |
aaaaaataatcttatatagtttattactttgcctattgaaaaaaaaaaaaaaatcaatcgcaaaataatgatttcctta-tttttaacgtgcatgtagat |
27572525 |
T |
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| Q |
213 |
aagaccagctctagtttcatggtcgatttttt-ttttttacaaatgg |
258 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27572526 |
aagaccagctctagtttcatggtcgattttttattttttacaaatgg |
27572572 |
T |
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