View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16670_high_7 (Length: 343)

Name: NF16670_high_7
Description: NF16670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16670_high_7
NF16670_high_7
[»] chr7 (7 HSPs)
chr7 (1-329)||(11657643-11657973)
chr7 (1-259)||(22612416-22612675)
chr7 (1-329)||(13474888-13475217)
chr7 (255-329)||(22611420-22611494)
chr7 (1-87)||(13773830-13773916)
chr7 (1-87)||(48378935-48379020)
chr7 (49-98)||(37943946-37943995)
[»] chr3 (10 HSPs)
chr3 (1-329)||(21100446-21100773)
chr3 (67-328)||(19186880-19187141)
chr3 (49-329)||(17793425-17793705)
chr3 (49-329)||(19101865-19102145)
chr3 (51-329)||(5941486-5941765)
chr3 (49-309)||(15958045-15958305)
chr3 (1-87)||(14057675-14057761)
chr3 (43-84)||(17959161-17959202)
chr3 (43-91)||(14479496-14479544)
chr3 (43-87)||(16942074-16942118)
[»] chr2 (5 HSPs)
chr2 (49-329)||(24788577-24788859)
chr2 (1-329)||(44583756-44584076)
chr2 (49-318)||(23651639-23651896)
chr2 (69-326)||(21553786-21554042)
chr2 (3-98)||(13362021-13362116)
[»] chr4 (6 HSPs)
chr4 (11-329)||(11558454-11558772)
chr4 (49-329)||(16282716-16282998)
chr4 (74-332)||(12230913-12231171)
chr4 (51-326)||(8808796-8809072)
chr4 (127-329)||(18218215-18218418)
chr4 (25-217)||(17338846-17339037)
[»] scaffold0166 (1 HSPs)
scaffold0166 (65-327)||(3417-3681)
[»] chr5 (3 HSPs)
chr5 (65-327)||(24760920-24761184)
chr5 (47-89)||(23950022-23950064)
chr5 (43-91)||(24829911-24829958)
[»] scaffold0145 (1 HSPs)
scaffold0145 (49-329)||(14717-14999)
[»] chr6 (2 HSPs)
chr6 (1-170)||(15118943-15119111)
chr6 (43-91)||(7680599-7680647)
[»] chr8 (3 HSPs)
chr8 (53-326)||(17883280-17883552)
chr8 (49-112)||(22553981-22554044)
chr8 (43-89)||(26859181-26859227)
[»] scaffold0218 (1 HSPs)
scaffold0218 (1-87)||(16538-16624)
[»] scaffold0091 (1 HSPs)
scaffold0091 (1-87)||(31190-31276)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-87)||(26065-26151)
[»] scaffold0061 (2 HSPs)
scaffold0061 (1-82)||(16665-16746)
scaffold0061 (1-82)||(25723-25804)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-87)||(132724-132810)
[»] chr1 (1 HSPs)
chr1 (1-87)||(51624858-51624943)
[»] scaffold0054 (1 HSPs)
scaffold0054 (44-89)||(71331-71376)
[»] scaffold0601 (1 HSPs)
scaffold0601 (25-112)||(4104-4191)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 11657643 - 11657973
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaacc 100  Q
    ||||||||||| |||||  |||||||||||| |  |||||  ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||    
T  11657643 ataacaacacttctactgtaacccctttacagcctcacaacaaaatattaaaccctagaaatgaagagattctcacccttacctcgaatccgtagaaacc 11657742  T
Q  101 ttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaa 200  Q
    || ||||||||| ||||| |||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  11657743 tttggtttggcttgatgtagctgcactagggttcctcttctctccctcttcttttcttctcccttttctctgattagcaaaactgatttctaatccctaa 11657842  T
Q  201 tattcctatttatatttgggctcaccatt-gctataattgtcttcctttcctacgcactacccttttacttctcccctcccccacttattat-aatctta 298  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  11657843 tattcctatttatatttgggctcactattcgctataattgtcttcctttcctacacactactcttttacttctcccctcccccacttattataaatctta 11657942  T
Q  299 ctttctacacccatgactctttatttatttt 329  Q
    ||||||||||||| |||||||||||||||||    
T  11657943 ctttctacacccacgactctttatttatttt 11657973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 22612675 - 22612416
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaacc 100  Q
    |||||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22612675 ataacaacactcctactataacccctttacatccccacaagccaatattaaaccctagagatgaagagattctcccccttacctcgaatccgtagaaacc 22612576  T
Q  101 ttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaa 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22612575 ttcggtttggctcgatgttgttgcactagggttccgcttctctctgtctgcttttcttctcccttttctctgattagaaaaactgatttctaatccctaa 22612476  T
Q  201 tattcctatttatatttgggctcaccatt-gctataattgtcttcctttcctacgcacta 259  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22612475 tattcctatttatatttgggctcaccattcgctataattgtcttcctttcctacgcacta 22612416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 13475217 - 13474888
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaacc 100  Q
    |||||||||||| ||||| |||||||||||| | ||||||   |||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  13475217 ataacaacactcttactataacccctttacagccccacaatagaatattaaaccctagagatgaagagattcttccctttacctcgaatccgtagaaacc 13475118  T
Q  101 ttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaa 200  Q
    |||| |||| |||||||||||||||||||||||| |||||||||| |||| ||||||||| ||||||||||  |||| ||||||||||||||||||||||    
T  13475117 ttcgatttgcctcgatgttgctgcactagggttcagcttctctccctctggttttcttcttccttttctctaattagcaaaactgatttctaatccctaa 13475018  T
Q  201 tattcctatttatatttgggctcac-cattgctataattgtcttcctttcctacgcactacccttttacttctcccctcccccacttattataatcttac 299  Q
    || ||||||||||||||||||||||   || |||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13475017 tactcctatttatatttgggctcactgttttctataattgtattcatttcctatgcactactcttttacttctcccctcccccacttattataatcttac 13474918  T
Q  300 tttctacacccatgactctttatttatttt 329  Q
    |||||||| ||| |||||||||||||||||    
T  13474917 tttctacatccacgactctttatttatttt 13474888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 22611494 - 22611420
Alignment:
Q  255 cactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatttt 329  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22611494 cactactcttttacttctcccctcccccacttattataatcttactttctacacccacgactctttatttatttt 22611420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 13773916 - 13773830
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    |||||||||||| ||||| |||||||||||| | | ||||  ||||| ||||||||||||||||||||||||   ||||||||||||    
T  13773916 ataacaacactcatactataacccctttacaaccctacaacaaaataataaaccctagagatgaagagattctatcccttacctcga 13773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 48378935 - 48379020
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    |||||||||||| ||||  |||||||||||| | | ||||  ||||||||||||||||||||||||||||||  |||||||||||||    
T  48378935 ataacaacactcatactctaacccctttacaaccctacaacaaaatattaaaccctagagatgaagagattc-tccccttacctcga 48379020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 37943995 - 37943946
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaa 98  Q
    ||||||||||||||||| |||||| ||| ||||||| |||||||| ||||    
T  37943995 taaaccctagagatgaatagattctccctcttaccttgaatccgtcgaaa 37943946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 21100773 - 21100446
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaacc 100  Q
    |||||||||||| | ||  |||| |||||||   ||||||  ||||||||||||||||| |||||||||||| |||| ||||||| ||||| ||||||||    
T  21100773 ataacaacactcatcctctaacctctttacagacccacaacaaaatattaaaccctagatatgaagagattctcccc-ttacctcaaatccatagaaacc 21100675  T
Q  101 ttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||| | || |||| |||||| ||||||||||    
T  21100674 ttcggtttggctcgatgttgctgcactagggttccgcttctctccccctgcttctcttctccctttactctgatcagcaaaattgatttttaatccctaa 21100575  T
Q  201 tattcctatttatatttgggctcaccattgctataattgtcttcctttcctacgcactacccttttacttctcccctcccccacttattataatcttact 300  Q
    ||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  21100574 tattcttatttatatttgggctcgcaattgctataattgtcttcctttcttacgcagtactcttttacttctcccctcccccacttattaaaatcttact 21100475  T
Q  301 ttctacacccatgactctttatttatttt 329  Q
    ||| ||||||| |||||||||||||||||    
T  21100474 ttccacacccacgactctttatttatttt 21100446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 67 - 328
Target Start/End: Original strand, 19186880 - 19187141
Alignment:
Q  67 agattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttt 166  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  19186880 agattctcctccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgccctagggttccgcttctctccctctgcttttcttctcccttt 19186979  T
Q  167 tctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcctttcctacgcactacccttt 265  Q
    |||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||  ||| |||||||||||||||||||||||| |||||| ||||    
T  19186980 tctct-attagcaaaactgatttctaatccctaatattcctatttatattttggctcattattcgctataattgtcttcctttcctacacactactcttt 19187078  T
Q  266 tacttctcccctcccccacttattataatcttactttctacacccatgactctttatttattt 328  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| | ||||||| ||||||    
T  19187079 tacttctcccctcccccacttattataattttgctttctacacccacgtctctttaattattt 19187141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 17793425 - 17793705
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtc 148  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||    
T  17793425 taaaccctagagatgaatagattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgttgctgcactacggttccgcttctcttcctc 17793524  T
Q  149 tgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcctt 247  Q
    |||| ||||||||||||||||||  | || |||||| || | ||| |||||||||||||||||||||||| |||||| |||  |||||||||||||| ||    
T  17793525 tgctattcttctcccttttctct-atcagcaaaacttatatgtaacccctaatattcctatttatatttgcgctcactattcactataattgtcttcttt 17793623  T
Q  248 tcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatttt 329  Q
    ||||| ||||||| ||||||||| |||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  17793624 tcctatgcactactcttttacttatccccttccccacttattgtaatcttactttctacacccagaactctttatttatttt 17793705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 19101865 - 19102145
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtc 148  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||    
T  19101865 taaaccctagagatgaatagattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgttgctgcactacggttccgcttctcttcctc 19101964  T
Q  149 tgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcctt 247  Q
    |||| ||||||||||||||||||  | || |||||| || | ||| |||||||||||||||||||||||| |||||| |||  |||||||||||||| ||    
T  19101965 tgctattcttctcccttttctct-atcagcaaaacttatatgtaacccctaatattcctatttatatttgcgctcactattcactataattgtcttcttt 19102063  T
Q  248 tcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatttt 329  Q
    ||||| ||||||| ||||||||| |||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  19102064 tcctatgcactactcttttacttatccccttccccacttattgtaatcttactttctacacccagaactctttatttatttt 19102145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 51 - 329
Target Start/End: Complemental strand, 5941765 - 5941486
Alignment:
Q  51 aaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctg 150  Q
    ||||||| ||||||| |||||| | |||||||||| ||||| |||||||||| |||||| | |||||||||| |||||||||| ||||||||||| | ||    
T  5941765 aaccctatagatgaatagattctctcccttacctcaaatccatagaaacctttggtttgacccgatgttgctacactagggtttcgcttctctccctatg 5941666  T
Q  151 cttttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcctttc 249  Q
    ||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||||||||| | ||||||| |||  ||||||||| ||||||||     
T  5941665 cttctcttctcccttttctctgatcagcaaaactgatttctaatccctaatattcatatttatatctaggctcactattctctataattgccttcctttt 5941566  T
Q  250 ctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatttt 329  Q
     || ||| ||| |||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5941565 ttatgcaatactcttttacttccccccttcctcacttattaaaatcttactttctacacccatgactctttatttatttt 5941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 309
Target Start/End: Complemental strand, 15958305 - 15958045
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtc 148  Q
    ||||| || |||||||| |||||| |||||||||||| ||||||||||||||||||||| | ||  |||| |||||||||| ||| ||| | ||||| ||    
T  15958305 taaactcttgagatgaatagattctcccccttacctcaaatccgtagaaaccttcggttggactaaatgtcgctgcactagagtttcgcatttctccttc 15958206  T
Q  149 tgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcctt 247  Q
    | ||| |||| || |||||||||| |||| |||||| |||||||||||||||||||| ||||||||  ||||||||| ||| | |||||||  | |||||    
T  15958205 ttcttctcttatctcttttctctgattagcaaaactaatttctaatccctaatattcttatttatacatgggctcactattcgttataatttccctcctt 15958106  T
Q  248 tcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacc 309  Q
    || || || ||||  ||||||||||||| | |||||| ||||  ||||||||||||||||||    
T  15958105 tcatatgcgctacaattttacttctcccat-ccccacatatttcaatcttactttctacacc 15958045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 14057761 - 14057675
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    |||||||||||| |||| |||||||| |||| | | |||   ||||| |||||||||||||||||||||||| |||| |||||||||    
T  14057761 ataacaacactcatactccaacccctctacaaccctacagcaaaataataaaccctagagatgaagagattctcccctttacctcga 14057675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 17959202 - 17959161
Alignment:
Q  43 aaatattaaaccctagagatgaagagattcacccccttacct 84  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  17959202 aaatattaaaccctagagatgaagagattctcccccttacct 17959161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 14479544 - 14479496
Alignment:
Q  43 aaatattaaaccctagagatgaagagattcacccccttacctcgaatcc 91  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||||||||    
T  14479544 aaataataaaccctagagatgaaaagattctcccccttacctcgaatcc 14479496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 16942118 - 16942074
Alignment:
Q  43 aaatattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    ||||| |||||||||||||||||||||||| || |||||||||||    
T  16942118 aaataataaaccctagagatgaagagattctccgccttacctcga 16942074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 24788577 - 24788859
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtc 148  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |     
T  24788577 taaaccctagagatgaatatattatcccccttacctcgaatccgtagaaaccttcggtttggctagaagttgctgcactagggttccgcttctctccctt 24788676  T
Q  149 tgcttttcttctccctttt-ctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcct 246  Q
    || |||||||||||||||| ||| | | || |||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  24788677 tgtttttcttctccctttttctccgatcagcaaaactaatttctaatccctaatattcctatttatatttgggctcactattcgctataattgtcttcct 24788776  T
Q  247 ttcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatttt 329  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  24788777 ttcatacgcactactcttttacttctcccctcccccacttattataatcttgctttctacacccacgactctttatttatttt 24788859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 44584076 - 44583756
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaacc 100  Q
    ||||||||||| |||||| ||| | |||||||| ||||||   |||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||    
T  44584076 ataacaacactgctactataactcatttacatccccacaacagaatattaaaccctagagacggagagattctcccccttacctcaaatccgtagaaacc 44583977  T
Q  101 ttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaa 200  Q
    || |||||| || ||||||||||||||||| |||||||||||||| |||||||||| |||||||||         || ||||||||||||||||||||||    
T  44583976 tttggtttgacttgatgttgctgcactaggattccgcttctctccatctgcttttcctctcccttt---------agcaaaactgatttctaatccctaa 44583886  T
Q  201 tattcctatttatatttgggctcaccatt-gctataattgtcttcctttcctacgcactacccttttacttctcccctcccccacttattataatcttac 299  Q
    ||||||||||||||||||||||||  ||| |||||||||||||| ||||||||| |||||| ||||||||||||||| ||||   || ||||||||||||    
T  44583885 tattcctatttatatttgggctcattattcgctataattgtcttgctttcctacacactactcttttacttctccccacccctttttgttataatcttac 44583786  T
Q  300 tttctacacccatgactctttatttatttt 329  Q
    |||||||||||| |||||||||||||||||    
T  44583785 tttctacacccacgactctttatttatttt 44583756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 49 - 318
Target Start/End: Complemental strand, 23651896 - 23651639
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtc 148  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||||| | |     
T  23651896 taaaccctagagatgaatagattctcccccttacctcgaatctgtagataccttcagtttggctcgatgttgctgcattagggttccgcttctctacctt 23651797  T
Q  149 tgcttttcttctcccttttctctggttagaaaa-actgatttctaatccctaatattcctatttatatttgggctcaccattg-ctataattgtcttcct 246  Q
    |||||              ||||| | ||  || |||||||||||||||||||||||||||||||||| |||| |||| | |  |||||||||  || ||    
T  23651796 tgctt--------------ctctgatcagccaatactgatttctaatccctaatattcctatttatatatgggttcactaatctctataattgcatttct 23651711  T
Q  247 ttcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactct 318  Q
    || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  23651710 ttactacgcactactcttttacttctcccctcccccacttattaaaatcttactttctacacccacgactct 23651639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 69 - 326
Target Start/End: Complemental strand, 21554042 - 21553786
Alignment:
Q  69 attcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttc 168  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| ||| | |||||||| |||||| |||||||| ||||||| ||||||| |||| |    
T  21554042 attctcccccttacctcgaatccgtagaaaccttcgttttggctcggtgtcgttgcactagagttccgtttctctccttctgcttctcttctctctttac 21553943  T
Q  169 tctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcctttcctacgcactaccctttta 267  Q
    |||| | |  ||||||||||||||||||||||||||| ||||||||  ||| ||||| ||| | |||  |  || ||||||||||||  ||||  |||||    
T  21553942 tctgatcaacaaaactgatttctaatccctaatattcttatttatacatggactcactattcgttatggt--tcctcctttcctacgtgctactatttta 21553845  T
Q  268 cttctcccctcccccacttattataatcttactttctacacccatgactctttatttat 326  Q
     |||||||||||||||| ||||   |||||||| ||||||||   ||||||||||||||    
T  21553844 attctcccctcccccacgtatttagatcttactctctacacctccgactctttatttat 21553786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 13362021 - 13362116
Alignment:
Q  3 aacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaa 98  Q
    |||||||||| |||| | ||  ||||||| | ||||||  ||||  |||||||||||||||||||||||| ||||||||||| |||| ||| ||||    
T  13362021 aacaacactcatactccgacatctttacagcaccacaattaaatgataaaccctagagatgaagagattctcccccttaccttgaattcgtcgaaa 13362116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 11558454 - 11558772
Alignment:
Q  11 tcctactacaacccctttacatcgccacaa-acaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttg 109  Q
    |||||||  |||| ||||||||| |||||| | |||||| ||||||||||| |||  |||||| || |||||||| ||||||||||||||||||||||||    
T  11558454 tcctactctaacctctttacatccccacaataaaaatat-aaaccctagagttgattagattctcctccttacctagaatccgtagaaaccttcggtttg 11558552  T
Q  110 gctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctat 209  Q
    ||||||||||| |||| ||||||||| ||||||||| ||||||| ||||||  |||||||||  | || ||||||||||||||| |||||||||||| ||    
T  11558553 gctcgatgttgttgcattagggttccacttctctccatctgcttctcttct-acttttctctcatcagcaaaactgatttctaaaccctaatattcccat 11558651  T
Q  210 ttatatttgggctcac-cattgctataattgtcttcctttcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacac 308  Q
    |||||| |||||||||  || | |||||||| |||  |||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  11558652 ttatatatgggctcactaatcgttataattgcctttatttcttacgcactactcttttacttctcccctcccccacttattaaaatcttactttctacac 11558751  T
Q  309 ccatgactctttatttatttt 329  Q
    ||| ||||||| |||||||||    
T  11558752 ccacgactcttcatttatttt 11558772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 49 - 329
Target Start/End: Complemental strand, 16282998 - 16282716
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtc 148  Q
    ||||||||| ||||||| |||||| ||||||||||||||| |||||||||| || |||||| ||||||||||||||| ||||||||| ||||| ||  |     
T  16282998 taaaccctatagatgaatagattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtagggttccacttctttctctt 16282899  T
Q  149 tgcttttcttctcccttttctctggttag-aaaaactgatttctaatccctaatattcctatttatatttgggctcac-cattgctataattgtcttcct 246  Q
    ||||| | |||||||||||| ||  ||||  ||||||||||||||||||||||||||||||| ||||  |||||||||  ||  ||| ||||  |||  |    
T  16282898 tgcttcttttctcccttttcccttattagccaaaactgatttctaatccctaatattcctatatataaatgggctcactaatatctagaattacctttat 16282799  T
Q  247 ttcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatttt 329  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||    
T  16282798 ttcctatgcactactcttttacttctcccctcccccacttattaaaaacttactttctacacccacgactctttatttatttt 16282716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 332
Target Start/End: Original strand, 12230913 - 12231171
Alignment:
Q  74 cccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttctctgg 173  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||||||| ||| ||||||| |||||||||| | ||||| |||||||||||||||||      
T  12230913 cccccttacctcgaatctgtagaaaccttcagtttggcttgatgttgctacacgagggttctgcttctctccctttgcttctcttctcccttttctcta- 12231011  T
Q  174 ttaga-aaaactgatttctaatccctaatattcctatttatatttgggctcaccattg-ctataattgtcttcctttcctacgcactacccttttacttc 271  Q
    | ||  |||| |||||||||||||||||||||| |||||||||  |||||||  | |  |||||||||  || |||||||| ||||||| ||||||||||    
T  12231012 taagccaaaattgatttctaatccctaatattcttatttatatc-gggctcattaatctctataattgcttttctttcctaagcactactcttttacttc 12231110  T
Q  272 tcccctcccccacttattataatcttactttctacacccatgactctttatttattttctt 332  Q
    || |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||    
T  12231111 tctcctcccccacttattaaaatcttactttctacactcacgactctttatttattttctt 12231171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 51 - 326
Target Start/End: Original strand, 8808796 - 8809072
Alignment:
Q  51 aaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctg 150  Q
    ||||||||||||||| |||||| |||||||||||| |||||||||||||||| |||||| |||||| | |||||||||||||||||| ||||||| ||||    
T  8808796 aaccctagagatgaatagattctcccccttacctcaaatccgtagaaacctttggtttgactcgatatcgctgcactagggttccgcctctctccttctg 8808895  T
Q  151 cttttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcctttc 249  Q
    ||| | || || ||||||| || | || ||||||||||||||||| ||| ||||| ||||||||| |||| |||| ||| | |||  ||||| || ||||    
T  8808896 cttcttttatctcttttctttgatcagcaaaactgatttctaatctctattattcttatttatatctgggatcactattcgttatggttgtcctcttttc 8808995  T
Q  250 ctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttat 326  Q
    ||| |  ||||  ||||||||||||||||| |||||||||  |||||||||||||||||||  ||||| ||||||||    
T  8808996 ctatgtcctacaattttacttctcccctccaccacttatttaaatcttactttctacaccctcgactccttatttat 8809072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 127 - 329
Target Start/End: Complemental strand, 18218418 - 18218215
Alignment:
Q  127 tagggttccgcttctctccgtctgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcacc 226  Q
    ||||||||| ||||||||| ||||||| |||||| ||||||| ||  | || ||||||||||||||| |||||||||||  |||||||| |||||||||     
T  18218418 tagggttccacttctctccatctgcttctcttctaccttttcgctcataagcaaaactgatttctaacccctaatattctcatttatatatgggctcact 18218319  T
Q  227 att-gctataattgtcttcctttcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttattta 325  Q
    | | | |||||||| | |  ||| ||||||||||| |||||||||||||| |||||| ||||||  |||||||||||||| ||| | |||||||||||||    
T  18218318 aatcgttataattgccattatttgctacgcactactcttttacttctcccatcccccgcttatttaaatcttactttctaaaccaacgactctttattta 18218219  T
Q  326 tttt 329  Q
    ||||    
T  18218218 tttt 18218215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 17338846 - 17339037
Alignment:
Q  25 ctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgc 124  Q
    ||||||||| ||||||  |||||||||||||||||||| ||||||||| |||  ||||||| | |||||  ||| ||||||||| ||| ||||||| |||    
T  17338846 ctttacatccccacaacaaaatattaaaccctagagataaagagattctcccatttacctcaactccgtcaaaatcttcggttttgcttgatgttgttgc 17338945  T
Q  125 -actagggttccgcttctctccgtctgcttttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctatttatattt 217  Q
     | |||||||| |||||||||  |||| || |||| ||| |||||||||   || |||||||| ||||||   |||||||||||||||||||||    
T  17338946 aattagggttctgcttctctc--tctgtttctcttttcctttttctctgtccagcaaaactgacttctaaattctaatattcctatttatattt 17339037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 65 - 327
Target Start/End: Original strand, 3417 - 3681
Alignment:
Q  65 agagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctccct 164  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| | |||||||| | ||||  ||||||||||    
T  3417 agagattccccctcttacctcgaatccttagaaaccttcggtttggctcggtgttgttgcactagggttcaggttctctccctatgctcctcttctccct 3516  T
Q  165 tttctctggttaga-aaaactgatttctaatccctaatattcctatttatatttgggctcaccattg-ctataattgtcttcctttcctacgcactaccc 262  Q
    |||||||| | ||  |||||||||||||||||| |||||||||||||||||| || |||||| | |  ||||||||  ||| |||||||||||||||| |    
T  3517 tttctctgatcagccaaaactgatttctaatccataatattcctatttatatatgagctcactaatctctataatttcctttctttcctacgcactactc 3616  T
Q  263 ttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatt 327  Q
    ||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  3617 ttttacttctctcgtcccccacttattaaaatcttactttctacacccacgactctttatttatt 3681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 65 - 327
Target Start/End: Original strand, 24760920 - 24761184
Alignment:
Q  65 agagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctccct 164  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| | |||||||| | ||||  ||||||||||    
T  24760920 agagattccccctcttacctcgaatccttagaaaccttcggtttggctcggtgttgttgcactagggttcaggttctctccctatgctcctcttctccct 24761019  T
Q  165 tttctctggttaga-aaaactgatttctaatccctaatattcctatttatatttgggctcaccattg-ctataattgtcttcctttcctacgcactaccc 262  Q
    |||||||| | ||  |||||||||||||||||| |||||||||||||||||| || |||||| | |  ||||||||  ||| |||||||||||||||| |    
T  24761020 tttctctgatcagccaaaactgatttctaatccataatattcctatttatatatgagctcactaatctctataatttcctttctttcctacgcactactc 24761119  T
Q  263 ttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatt 327  Q
    ||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  24761120 ttttacttctctcgtcccccacttattaaaatcttactttctacacccacgactctttatttatt 24761184  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 23950064 - 23950022
Alignment:
Q  47 attaaaccctagagatgaagagattcacccccttacctcgaat 89  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  23950064 attaaaccctagagatgaaaagattctcccccttacctcgaat 23950022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 24829958 - 24829911
Alignment:
Q  43 aaatattaaaccctagagatgaagagattcacccccttacctcgaatcc 91  Q
    ||||| |||||||||||||||||| |||||  |||||||||||||||||    
T  24829958 aaataataaaccctagagatgaagcgattc-tccccttacctcgaatcc 24829911  T

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Target: scaffold0145 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 14717 - 14999
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtc 148  Q
    ||||||||| ||||||| |||||| ||||||||||||||| |||||||||| || |||||| ||||||||||||||| ||||||||| ||||| ||  |     
T  14717 taaaccctatagatgaatagattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtagggttccacttctttctctt 14816  T
Q  149 tgcttttcttctcccttttctctggttag-aaaaactgatttctaatccctaatattcctatttatatttgggctcac-cattgctataattgtcttcct 246  Q
    ||||| | |||||||||||||||  ||||  ||||||||||||||||||||||||||||||| ||||  |||||||||  ||  ||| ||||  |||  |    
T  14817 tgcttcttttctcccttttctcttattagccaaaactgatttctaatccctaatattcctatatataaatgggctcactaatatctagaattacctttat 14916  T
Q  247 ttcctacgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttatttt 329  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||    
T  14917 ttcctatgcactactcttttacttctcccctcccccacttattaaaaacttactttctacacccacgactctttatttatttt 14999  T

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Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 15118943 - 15119111
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaacc 100  Q
    ||||||||||| ||| || |||||||||||||  |||||||||||||||||| |||||||||||||||||||  |||||||||||||||| |||||||||    
T  15118943 ataacaacactactattataacccctttacattcccacaaacaaatattaaatcctagagatgaagagattcttccccttacctcgaatc-gtagaaacc 15119041  T
Q  101 ttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgcttttcttctcccttttctc 170  Q
    |||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  15119042 ttcgatttagctcgatgttgctgcactagggttctgcttctctccgtcttcttttcttctcccttttctc 15119111  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 7680647 - 7680599
Alignment:
Q  43 aaatattaaaccctagagatgaagagattcacccccttacctcgaatcc 91  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||||||    
T  7680647 aaataataaaccctagacatgaagagattctcccccttacctcgaatcc 7680599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 326
Target Start/End: Original strand, 17883280 - 17883552
Alignment:
Q  53 ccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccgtctgct 152  Q
    ||||| ||||||| |||||| |||| ||||||||||||| |||||||||||||||||||||| | |   ||||||||||||||| |||||||| ||||||    
T  17883280 ccctatagatgaatagattctcccc-ttacctcgaatccatagaaaccttcggtttggctcggt-tcaatgcactagggttccgtttctctccttctgct 17883377  T
Q  153 tttcttctcccttttctctggttagaaaaactgatttctaatccctaatattcctatttatatttgggctcaccatt-gctataattgtcttcctttcct 251  Q
    | ||||||| |||| | | | | |  |||||||||||||||||||||| ||||  ||||| |  ||| ||||  ||| | |||  || || |||||||||    
T  17883378 tctcttctctctttccccggatcaacaaaactgatttctaatccctaacattctcatttaaacatggtctcaatattcgttatggttttcctcctttcct 17883477  T
Q  252 acgcactacccttttacttctcccctcccccacttattataatcttactttctacacccatgactctttatttat 326  Q
    |||| ||||  |||||||||| ||||||||||||||||  ||| ||||| ||| || |   ||||||||||||||    
T  17883478 acgcgctacaattttacttcttccctcccccacttatttaaatattactctctgcatctccgactctttatttat 17883552  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 22553981 - 22554044
Alignment:
Q  49 taaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggct 112  Q
    ||||||||||||||||| |||||| |||||||||||| ||| ||| |||| ||| |||||||||    
T  22553981 taaaccctagagatgaatagattctcccccttacctcaaattcgtcgaaatctttggtttggct 22554044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 26859227 - 26859181
Alignment:
Q  43 aaatattaaaccctagagatgaagagattcacccccttacctcgaat 89  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  26859227 aaataataagccctagagatgaagagattctcccccttacctcgaat 26859181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 16538 - 16624
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    |||||||||||| ||||  |||||||||||| | | ||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  16538 ataacaacactcatactctaacccctttacaaccctacagaaaaatattaaaccctagagatgaagagattctcccccttacctcga 16624  T

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Target: scaffold0091 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31190 - 31276
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaa-tattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    |||||||||||| |||| ||||||||||||| | ||| ||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  31190 ataacaacactcatactccaacccctttacaac-ccaaaaacaaaataataaaccctagagatgaagagattctcccccttacctcga 31276  T

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Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 26151 - 26065
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    |||||||||||| |||| ||||||||||||| | | | |   ||||| |||||||||||||||||||||||| ||||||||||||||    
T  26151 ataacaacactcatactccaacccctttacaaccctatagcaaaataataaaccctagagatgaagagattctcccccttacctcga 26065  T

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Target: scaffold0061 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16746 - 16665
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttac 82  Q
    |||||||||||| |||| ||||||||||||| | | |||   ||||| |||||||||||||||||||||||| |||||||||    
T  16746 ataacaacactcatactccaacccctttacaaccctacagcaaaataataaaccctagagatgaagagattctcccccttac 16665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 25804 - 25723
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttac 82  Q
    |||||||||||| |||| ||||||||||||| | | |||   ||||| |||||||||||||||||||||||| |||||||||    
T  25804 ataacaacactcatactccaacccctttacaaccctacagcaaaataataaaccctagagatgaagagattctcccccttac 25723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 132724 - 132810
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    ||||||| |||| || | ||||||||||||| | | ||||  ||||| ||||||||||| |||||||||||| ||||||||||||||    
T  132724 ataacaaaactcatattccaacccctttacaaccctacaacaaaataataaaccctagaaatgaagagattctcccccttacctcga 132810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 51624943 - 51624858
Alignment:
Q  1 ataacaacactcctactacaacccctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcga 87  Q
    |||||||||||| ||||  |||||||||||| | | |||   |||||||||||| ||||||||||||||||| ||||||||||||||    
T  51624943 ataacaacactcatactctaacccctttacaaccctacagcaaaatattaaaccttagagatgaagagattc-cccccttacctcga 51624858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 71331 - 71376
Alignment:
Q  44 aatattaaaccctagagatgaagagattcacccccttacctcgaat 89  Q
    |||| ||||||| |||||||||||||||| ||||||||||||||||    
T  71331 aatagtaaacccaagagatgaagagattctcccccttacctcgaat 71376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 4191 - 4104
Alignment:
Q  25 ctttacatcgccacaaacaaatattaaaccctagagatgaagagattcacccccttacctcgaatccgtagaaaccttcggtttggct 112  Q
    ||||||| | ||||||  ||||| |||||||||  ||||||||||||| | |||||||||||||| |||  ||| || ||||||||||    
T  4191 ctttacagccccacaataaaataataaaccctaaggatgaagagattctctcccttacctcgaattcgtcaaaatctccggtttggct 4104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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