View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16670_high_9 (Length: 339)

Name: NF16670_high_9
Description: NF16670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16670_high_9
NF16670_high_9
[»] chr6 (15 HSPs)
chr6 (13-316)||(4265936-4266239)
chr6 (13-76)||(4458655-4458718)
chr6 (113-309)||(4623353-4623549)
chr6 (197-309)||(4471047-4471159)
chr6 (212-316)||(4482010-4482114)
chr6 (114-290)||(4259081-4259257)
chr6 (212-309)||(4575600-4575697)
chr6 (114-287)||(4627197-4627370)
chr6 (214-309)||(4561809-4561904)
chr6 (212-298)||(3173148-3173234)
chr6 (184-298)||(4489094-4489208)
chr6 (212-290)||(4255544-4255622)
chr6 (115-152)||(4458816-4458853)
chr6 (200-281)||(4462343-4462424)
chr6 (212-309)||(4298384-4298481)
[»] chr5 (1 HSPs)
chr5 (13-316)||(24104032-24104344)
[»] scaffold0477 (1 HSPs)
scaffold0477 (114-309)||(3408-3603)
[»] chr7 (1 HSPs)
chr7 (200-309)||(3087878-3087987)
[»] scaffold0288 (1 HSPs)
scaffold0288 (208-309)||(2340-2441)


Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 4266239 - 4265936
Alignment:
Q  13 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatatagattcatgcacatttctcttnnnnnnnnnnnnggatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||    
T  4266239 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatatagattcatgcacatttctcttaaaaagaaaaaaggatca 4266140  T
Q  113 taattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaagga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4266139 taattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaagga 4266040  T
Q  213 ttgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4266039 ttgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagattg 4265940  T
Q  313 atga 316  Q
    ||||    
T  4265939 atga 4265936  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 4458655 - 4458718
Alignment:
Q  13 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatataga 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4458655 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacatatataga 4458718  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 309
Target Start/End: Original strand, 4623353 - 4623549
Alignment:
Q  113 taattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaagga 212  Q
    |||||||||||||||||||||| |||||||||   || ||| ||| |||| || |||  | ||||||| |||  |||| |   ||| || |||||||  |    
T  4623353 taattgttacctttgagtggtattagacctttctcaaacagtgtatgaaagtgtaaaacagacaagaaggtacttgcactagctggggagaagaaaacaa 4623452  T
Q  213 ttgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 309  Q
    ||||||||||||| ||||| ||||| | ||||||||| | |||||||||||||||||| |||||||||| |||||||| || |||| || |||||||    
T  4623453 ttgggagtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcaga 4623549  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 4471047 - 4471159
Alignment:
Q  197 ggagaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaac 296  Q
    |||||||||| || ||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| ||||  | |||||||| ||| || |||| ||    
T  4471047 ggagaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaactggagggataagac 4471146  T
Q  297 catcattggcaga 309  Q
    || || |||||||    
T  4471147 cagcagtggcaga 4471159  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 4482010 - 4482114
Alignment:
Q  212 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagatt 311  Q
    |||||||||||||||||||| |||||||||| |||||| |||||||| ||||| ||||| |||||||| | ||| || |||| |||| || |||||||||    
T  4482010 attgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataataccagcagtggcagatt 4482109  T
Q  312 gatga 316  Q
     ||||    
T  4482110 catga 4482114  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 290
Target Start/End: Complemental strand, 4259257 - 4259081
Alignment:
Q  114 aattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggat 213  Q
    ||||||||||||||||||||| ||||||||||  || ||| ||| |||| || |||  | ||||||| |||  |||| |   |||||| |||||||  ||    
T  4259257 aattgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgtaaaacagacaagaaggtacttgcactagctggagagaagaaaacaat 4259158  T
Q  214 tgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaa 290  Q
    |||||||||||| ||||| ||||| | |||  |||| | |||||||||||| ||||| ||||||||||  |||||||    
T  4259157 tgggagtgcatgctcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaa 4259081  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 4575600 - 4575697
Alignment:
Q  212 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 309  Q
    |||||||| ||||||||||| |||||||||| |||||| |||||||| ||||| ||||| |||||||| | ||| || |||| |||| || |||||||    
T  4575600 attgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcaga 4575697  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 287
Target Start/End: Original strand, 4627197 - 4627370
Alignment:
Q  114 aattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggat 213  Q
    ||||||||||||||||||||| ||||||||||  || ||| ||| |||| || ||| || ||||||| | | ||||| |  | | |||||||| |   ||    
T  4627197 aattgttacctttgagtggtattagacctttttcaaacagtgtacgaaagtgcaaaatagacaagaaagaacatgcactagaagtagaaaagagagcaat 4627296  T
Q  214 tgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtg 287  Q
    |||||||||||||||||| ||||| | ||| ||||| | |||  ||||||| ||||| |||||||||| |||||    
T  4627297 tgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtg 4627370  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 4561809 - 4561904
Alignment:
Q  214 tgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 309  Q
    |||||||||||||||||| |||||| ||| |||||| |||||||| ||||| ||||| |||||||| | ||| || |||| |||| || |||||||    
T  4561809 tgggagtgcatgttcttcagcagcagctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagcagtggcaga 4561904  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 3173148 - 3173234
Alignment:
Q  212 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaacca 298  Q
    |||||||| ||||||||||| ||| |||||| |||||| ||||| || ||||||||||| |||||||||| ||| || |||| ||||    
T  3173148 attgggagagcatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtaactggaggtataagacca 3173234  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 298
Target Start/End: Complemental strand, 4489208 - 4489094
Alignment:
Q  184 agatgcattgcatggagaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaatt 283  Q
    ||||||| | ||||| ||||||| ||  |||||||||||||||||||| |||||||||| |||||| | ||| |  ||||| ||||| |||||||||| |    
T  4489208 agatgcactacatggggaaaagagaacaattgggagtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagtaact 4489109  T
Q  284 ggtggaataaaacca 298  Q
    || || |||| ||||    
T  4489108 ggagggataagacca 4489094  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 4255622 - 4255544
Alignment:
Q  212 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaa 290  Q
    |||||||||||||| ||||| ||||| | ||| ||||| | |||||||||||| ||||| |||||||||| | ||||||    
T  4255622 attgggagtgcatgctcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaactagtggaa 4255544  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 4458816 - 4458853
Alignment:
Q  115 attgttacctttgagtggtagtagaccttttcgaatca 152  Q
    |||||||||||||||||||||||||||||||| |||||    
T  4458816 attgttacctttgagtggtagtagaccttttccaatca 4458853  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 4462343 - 4462424
Alignment:
Q  200 gaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaa 281  Q
    ||||||| || ||||||||||||| ||| ||| || ||||| | |||||| |||||||||||||| ||||| | ||||||||    
T  4462343 gaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaa 4462424  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 309
Target Start/End: Complemental strand, 4298481 - 4298384
Alignment:
Q  212 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 309  Q
    |||||||||||||||||||||||||| | ||| ||||| | |||  || |||| | ||| |||||||||| |||||| | || |||| || |||||||    
T  4298481 attgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccagcagtggcaga 4298384  T

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Target: chr5 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 24104032 - 24104344
Alignment:
Q  13 attttgatgatgcacataatcgcaatgcgactgatgcagccctaaacgtgatcacat-----atatagattcatgcacatttctcttnnnnnnnnnnnng 107  Q
    ||||| |||||||||||||| || |||||||||||||||||||||  ||||||| ||     ||||||| |||||||||||||||||            |    
T  24104032 attttaatgatgcacataattgccatgcgactgatgcagccctaagtgtgatcaaattaaatatatagaatcatgcacatttctcttaaaaagaaaaaag 24104131  T
Q  108 gatcataattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaa 207  Q
    |||||||||| |||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  24104132 gatcataatttttacctttgagtggtactagacctttttgaatcagattaggatattgaaaagtacacaagaaggtagatgcattgcatggagaaaagaa 24104231  T
Q  208 aaggattgggagtgcatgttcttccgcagcatctat----tgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcatt 303  Q
    ||| ||||||||||||||||||||  ||||||| ||    |||||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  24104232 aagaattgggagtgcatgttcttcaacagcatcgatcaactgtaaatggcatgtaacaatccgaaactaagcaagtaattggtggaataacaccatcatt 24104331  T
Q  304 ggcagattgatga 316  Q
    |||||||||||||    
T  24104332 ggcagattgatga 24104344  T

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Target: scaffold0477 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 309
Target Start/End: Complemental strand, 3603 - 3408
Alignment:
Q  114 aattgttacctttgagtggtagtagaccttttcgaatcagagtaggaaattgaaaagtacacaagaacgtagatgcattgcatggagaaaagaaaaggat 213  Q
    |||| |||||||||||||||| ||| |||||| ||| ||| |||  ||| || |||| | ||||||| | | ||||| |||  |  ||||||| ||  ||    
T  3603 aatttttacctttgagtggtattagtcctttttgaaacagtgtacaaaagtgtaaagcagacaagaaagaacatgcactgccggtggaaaagagaacaat 3504  T
Q  214 tgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcaga 309  Q
    |||||||||||||||||| ||||| | ||| ||||| |||||||||||||| |  || | |||||||| | |||||| || |||| || |||||||    
T  3503 tgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccagcagtggcaga 3408  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 3087878 - 3087987
Alignment:
Q  200 gaaaagaaaaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccat 299  Q
    ||||||| |||||||||||||||||  ||||| ||| | | ||| ||||| ||||||||| |||| |  || |||||||||| ||||||||||| ||||     
T  3087878 gaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaactggtggaataagaccag 3087977  T
Q  300 cattggcaga 309  Q
    ||| ||||||    
T  3087978 catcggcaga 3087987  T

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Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 2441 - 2340
Alignment:
Q  208 aaggattgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggca 307  Q
    ||||||||||||||||| |||||| ||||| | ||| ||||| | |||||||||||| ||||| |||| ||| | ||| || |||| ||||  |||||||    
T  2441 aaggattgggagtgcatattcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggca 2342  T
Q  308 ga 309  Q
    ||    
T  2341 ga 2340  T

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