View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16670_low_2 (Length: 382)
Name: NF16670_low_2
Description: NF16670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16670_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 49001643 - 49001807
Alignment:
| Q |
74 |
ttatagcttgctacatgtttagctttctatatttatttgtatgtttatatgcatgttataactctgtatttgtgccaatccttgaagtaatgtatgttta |
173 |
Q |
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| T |
49001643 |
ttatagcttgctacatgtttagctttctatatttatttgtatgtttatatgcatgttataactctgtatttgtgccaatccttaaagtaatgtatgttta |
49001742 |
T |
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| Q |
174 |
tgacagctgttatttaaattcaatccttttctttttaaatgaaaaattaaatggtcaacgatata |
238 |
Q |
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| T |
49001743 |
tgacagctgttatttaaattcaatccttttctttttaaatgaaaaattaaaaggtcaacgatata |
49001807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 49001843 - 49001940
Alignment:
| Q |
274 |
aattatgtgatttgagcagacaaatttaacctaacgaatcaaaccgagtttttcgtaaactttaaatgagtcgaacttaaactaaataaaatgttcat |
371 |
Q |
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| T |
49001843 |
aattatgtgattcgagcagacaaatttaacctaacgaatcaaaccgagtttttcgtaaactttaaatgagtcgaacttaaactaaataaaatgttcat |
49001940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 7029326 - 7029244
Alignment:
| Q |
274 |
aattatgtgatttgagcagacaaatttaacctaacgaatcaaaccgagtttttcgtaaactttaaatgagtcgaacttaaact |
356 |
Q |
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| T |
7029326 |
aattatgtgatttgagcaaacaaactaaacctaaagaacctaaccaaattgttcgtaaactttaaacgagccgaacttaaact |
7029244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 350
Target Start/End: Complemental strand, 22563448 - 22563374
Alignment:
| Q |
276 |
ttatgtgatttgagcagacaaatttaacctaacgaatcaaaccgagtttttcgtaaactttaaatgagtcgaact |
350 |
Q |
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| T |
22563448 |
ttatgtgatttgagcaaacaaattgaacctaacgaaccgaaccgaactgttcgtgaaccttaaacgagtcgaact |
22563374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 17865648 - 17865696
Alignment:
| Q |
274 |
aattatgtgatttgagcagacaaatttaacctaacgaatcaaaccgagt |
322 |
Q |
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| T |
17865648 |
aattatgtgattcgagcaaacaaattgaacctaacgagtcgaaccgagt |
17865696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 27195606 - 27195539
Alignment:
| Q |
283 |
atttgagcagacaaatttaacctaacgaatcaaaccgagtttttcgtaaactttaaatgagtcgaact |
350 |
Q |
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| T |
27195606 |
atttgagtaggcaagttgaacctaacgaatcaaaccgagctgttcgtgaactttaaacgagccgaact |
27195539 |
T |
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