View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16671_high_4 (Length: 319)
Name: NF16671_high_4
Description: NF16671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16671_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 44262304 - 44262569
Alignment:
| Q |
16 |
gctaagagaggttagactttaaagtgtttctatatcattggatattgtaccacagagattcttgtgagagagatcaagcttctttacatttccatctgag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262304 |
gctaagagaggttagactttaaagtgtttctatatcattggatattgaaccactgagattcttgtgagagagatcaagcttctttacatttccatctgag |
44262403 |
T |
|
| Q |
116 |
ttgcatttgatgctagtccagttacaatgagctgaatcacttcctaatgccaattttcaatcatgaagattgaagagtgttgaaaggatcaacaagacct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262404 |
ttgcatttgatgctagtccagttacaatgagctgaatcacttcctaatgccaattttcaatcatgaagattgaagagtgttgaaaggatcaacaagacct |
44262503 |
T |
|
| Q |
216 |
gcttttttatagaaagcaatgctgatacttaatcatttgatactctaatctcatatactgtgccaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262504 |
gcttttttatagaaagcaatgctgatacttcatcatttgatactctaatctcatatactgtgccaa |
44262569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 44262550 - 44262589
Alignment:
| Q |
280 |
aatctcatatactgtgccaagaatattggtttgttatgcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262550 |
aatctcatatactgtgccaagaatattggtttgttatgcc |
44262589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 39470331 - 39470460
Alignment:
| Q |
18 |
taagagaggttagactttaaagtgtttctatatcattggatattgtaccacagagattcttgtgagagagatcaagcttctttacatttccatctgagtt |
117 |
Q |
| |
|
||||||| || ||| ||| |||| ||| ||||||| ||||| | |||||| |||||||||||||||||||||||| |||| ||| ||||| | ||||| |
|
|
| T |
39470331 |
taagagaagtaagattttgaagtctttgtatatcaccggatactataccactgagattcttgtgagagagatcaaggttctccacagttccagccgagtt |
39470430 |
T |
|
| Q |
118 |
gcatttgatgctagtccagttacaatgagc |
147 |
Q |
| |
|
||||| ||| | ||||||||||||||||| |
|
|
| T |
39470431 |
gcattcgattccggtccagttacaatgagc |
39470460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 39470486 - 39470547
Alignment:
| Q |
192 |
gtgttgaaaggatcaacaagacctgcttttttatagaaagcaatgctgatacttaatcatttga |
255 |
Q |
| |
|
||||| |||||||||||||||||| | ||| | ||||||||| |||||||||| ||||||||| |
|
|
| T |
39470486 |
gtgttcaaaggatcaacaagacct--tctttcaaagaaagcaaagctgatacttcatcatttga |
39470547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 30087567 - 30087490
Alignment:
| Q |
71 |
agattcttgtgagagagatcaagcttctttacatttccatctgagttgcatttgatgctagtccagttacaatgagct |
148 |
Q |
| |
|
|||||| |||| ||||||| |||||||| |||| |||| |||||||||| | || | ||||||||||||||||||| |
|
|
| T |
30087567 |
agattcatgtgtgagagattaagcttctctacagctccagctgagttgcactggacaccagtccagttacaatgagct |
30087490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University