View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16671_high_5 (Length: 276)
Name: NF16671_high_5
Description: NF16671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16671_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 38214386 - 38214136
Alignment:
| Q |
11 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatt |
110 |
Q |
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| T |
38214386 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatt |
38214287 |
T |
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| Q |
111 |
taagttcgtgtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaa |
210 |
Q |
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| T |
38214286 |
taagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaa |
38214187 |
T |
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| Q |
211 |
taaggatcttcaagaatgctgaatcaattggtattccattcccaaagaacc |
261 |
Q |
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| T |
38214186 |
taaggatcttcaagaatgctgaatcaattggtattccattcccaaagaacc |
38214136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 38218605 - 38218355
Alignment:
| Q |
11 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatt |
110 |
Q |
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| T |
38218605 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagtaatatatatt |
38218506 |
T |
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| Q |
111 |
taagttcgtgtttgtataaagaactcaattatgtgtgtataacaaacactctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaa |
210 |
Q |
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| T |
38218505 |
taagttcgtgtttgtataaagaactcaattatgtgcttataacaaacacgctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaa |
38218406 |
T |
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| Q |
211 |
taaggatcttcaagaatgctgaatcaattggtattccattcccaaagaacc |
261 |
Q |
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| T |
38218405 |
taaggatcttcaagaatgctgaatcaattggtattccattcccaaagaacc |
38218355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 42991143 - 42991214
Alignment:
| Q |
11 |
cagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagcc |
82 |
Q |
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| T |
42991143 |
cagagaacaacaattctacctctggtttgatcccaccaagaacttccacacttactctatcatctggaagcc |
42991214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 42991291 - 42991369
Alignment:
| Q |
183 |
tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaacc |
261 |
Q |
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| T |
42991291 |
tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaacc |
42991369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 35017811 - 35017899
Alignment:
| Q |
12 |
agagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgtaagt |
100 |
Q |
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| T |
35017811 |
agagaacaacaattctacctatggtttgaccccactagaaacttccacacttactccatcatttggaaaccccaacacatcatgtaagt |
35017899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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