View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16671_low_1 (Length: 952)
Name: NF16671_low_1
Description: NF16671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16671_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 195 - 680
Target Start/End: Original strand, 40114373 - 40114858
Alignment:
| Q |
195 |
ggtgggttaagaggtaggatgatgtgtggtggatgtgggttgatgcttggtattggtttgtagataggtgtcggttgtattaaggatgggtagggaaaat |
294 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40114373 |
ggtggtttaagaggtaggatgatgtgtggtggatgtgggttgatgcttggtattggtttgtagataggtgtcagttgtattaaggatgggtagggaaaat |
40114472 |
T |
|
| Q |
295 |
ggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccgacaaagat |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40114473 |
ggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccaacaaagat |
40114572 |
T |
|
| Q |
395 |
acacggttgagatttaggttggagtttgttgctattgtaaggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtgggtgatattatatgtt |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114573 |
acacggttgagatttaggttggagtttgttgctattgtaaggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtgggtgatattatatgtt |
40114672 |
T |
|
| Q |
495 |
tggttatgaagggtatgatagggtgttttcatattgagtgttggtgtgggcaacctgttgattagatatgctgctgtactaaatgcaaacgaccaaaatt |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40114673 |
tggttatgaagggtatgatagggtgttttcatattgagtgttggtgtgggcaacctgttgattagatatgctgctgtactaaatgcaagcgaccaaaatt |
40114772 |
T |
|
| Q |
595 |
gagatggtaggttggcatgatgaggtaatgctctagcagtttctactatgtgtctatgtcttcgttcggcagaggaatttagttca |
680 |
Q |
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| T |
40114773 |
gagatggtaggttggcatgatgtagtaatgctctagcagtttctactatgtgtctatgtcttcgttcggcagaggaatttagttca |
40114858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 709 - 934
Target Start/End: Original strand, 40114887 - 40115112
Alignment:
| Q |
709 |
atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaac |
808 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40114887 |
atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagagaagttaaaatgtttctcaacaac |
40114986 |
T |
|
| Q |
809 |
atttttaaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtat |
908 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114987 |
atttttaaattgaggaaatatagtggagacatcagatttatttttcatgggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtat |
40115086 |
T |
|
| Q |
909 |
aagaaaccatctaaggacctaacagg |
934 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
40115087 |
aagaaaccatctaaggacctaacagg |
40115112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 40114229 - 40114377
Alignment:
| Q |
9 |
agaagcataggtaggtttaaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttgaggatttgcaacagatg |
108 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114229 |
agaatcataggtaggtttgaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttgaggatttgcaacagatg |
40114328 |
T |
|
| Q |
109 |
tagaggtagtggtggtcgcagtttgtgaagtattagttgtaagtggtgg |
157 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40114329 |
tagaggtagtggtggtcacagtttgtgaagtattagttgtaagtggtgg |
40114377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 834 - 930
Target Start/End: Original strand, 9006838 - 9006934
Alignment:
| Q |
834 |
gagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaa |
930 |
Q |
| |
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||||||||||||||||||||||| ||| | | || ||||||||| ||||||||||| |||||||||| || |||||| | |||||||||||||||| |
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| T |
9006838 |
gagacatcagatttatttttcattggatataacccaatatatttggagaaatgatctacaaatattaagtaatataagtagccatctaaggacctaa |
9006934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 709 - 930
Target Start/End: Original strand, 656021 - 656242
Alignment:
| Q |
709 |
atataccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaac |
808 |
Q |
| |
|
|||||||||| ||||| | ||| ||||||||||| ||| |||| || ||||| || || || || ||| | ||||| || ||||||| ||| | |||||| |
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| T |
656021 |
atataccattagaggagagataggattttagtttgatgtattccccaccattgtcagaatatagagaaatgataggcaaattaaaatattttttaacaac |
656120 |
T |
|
| Q |
809 |
atttttaaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtat |
908 |
Q |
| |
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| |||| |||| |||||| ||| | |||||||| ||||||||||||| ||| | | |||||||||||| | |||||||||||||| |||||||||||| |
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| T |
656121 |
acttttgaatttaggaaaaataatagagacatctgatttatttttcaatggatataaccaaatatatttcaaaaaatgatcaacaaaaattagatagtat |
656220 |
T |
|
| Q |
909 |
aagaaaccatctaaggacctaa |
930 |
Q |
| |
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||| |||||||||| ||||||| |
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| T |
656221 |
aagtaaccatctaatgacctaa |
656242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 265 - 393
Target Start/End: Original strand, 655584 - 655711
Alignment:
| Q |
265 |
tcggttgtattaaggatgggtagggaaaatggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggc |
364 |
Q |
| |
|
|||||||||| ||||||| || ||||| ||||| |||| |||||| ||||| || |||||||| |||| || ||| | ||||| | ||| ||||| || |
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| T |
655584 |
tcggttgtatcaaggatgtatatggaaagtggttatcatggaagacaacatggcgagatgtgtagattta-ttggttgtaggatctaagcaacgataagc |
655682 |
T |
|
| Q |
365 |
atattgagatggtgagtaaccgacaaaga |
393 |
Q |
| |
|
||||||||| |||||||| || ||||||| |
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| T |
655683 |
atattgagagggtgagtagcctacaaaga |
655711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 288 - 478
Target Start/End: Complemental strand, 3018172 - 3017982
Alignment:
| Q |
288 |
ggaaaatggttgtcatagaagaccacatgacgggatgtgtatattttgtttgttatgggatccaggcagcgataggcatattgagatggtgagtaaccga |
387 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| || || || |||||||| ||| ||||||| || || ||||| |||||||| || ||||||||||| | |
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|
| T |
3018172 |
ggaaaatggttgtcatggaatacaacatgacgtgaagtataaattttgttggttttgggatctagacaacgatatgcatattgtgagggtgagtaaccaa |
3018073 |
T |
|
| Q |
388 |
caaagatacacggttgagatttaggttggagtttgttgctattgtaaggtcgtaaccatggaaaacataagcaaccaaaagagtgtaggtg |
478 |
Q |
| |
|
|| ||||| | | |||||| ||||||||||| | | | |||||||| || |||||| ||||| | ||| ||||| ||||||||||| |
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|
| T |
3018072 |
tgaatatacatgatatagatttgggttggagtttatggtttgtgtaaggttttagccatgggaaacaaaggcatccaaaggagtgtaggtg |
3017982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 714 - 930
Target Start/End: Complemental strand, 3017740 - 3017524
Alignment:
| Q |
714 |
ccattggaggacaaataagattttagttttatgaattctcctccattatctgagtaaagggaagtaatagggaagttaaaatgtttctcaacaacatttt |
813 |
Q |
| |
|
||||| || |||||| ||||| ||||||| ||| | ||||| ||||| || || || || ||| ||| || |||||||||| ||| ||||||| | || |
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| T |
3017740 |
ccatttgatgacaaaaaagatcttagtttaatgtactctccaccattgtcagaatatagagaaacaattggtaagttaaaatatttttcaacaagttatt |
3017641 |
T |
|
| Q |
814 |
taaattgaggaaatatagtggagacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaa |
913 |
Q |
| |
|
| ||||||||||| | | ||||||||||| || |||||||| ||| | | ||| | |||||||| ||||||||||||| ||||||||||| ||| | |
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|
| T |
3017640 |
tgaattgaggaaaaagtgatgagacatcagacttgtttttcatgggatataaccatttgtattttgaataatgatcaacaaagattagatagtacaagta |
3017541 |
T |
|
| Q |
914 |
accatctaaggacctaa |
930 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
3017540 |
gccatctaacgacctaa |
3017524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 835 - 930
Target Start/End: Original strand, 23971201 - 23971296
Alignment:
| Q |
835 |
agacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaa |
930 |
Q |
| |
|
|||||||||| ||| |||||| ||| |||||||||| ||||| || |||||||||| ||| |||| ||| || | |||||||||||| ||||||| |
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|
| T |
23971201 |
agacatcagacttaaatttcattggataaagccaaatgtatttggaaaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaa |
23971296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 657
Target Start/End: Complemental strand, 3017878 - 3017797
Alignment:
| Q |
576 |
aatgcaaacgaccaaaattgagatggtaggttggcatgatgaggtaatgctctagcagtttctactatgtgtctatgtcttc |
657 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||| || | | ||||||||| ||||| |||| ||||||||||||| |
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|
| T |
3017878 |
aatgcaaatgaccaaaattgagatggtaaattagcatggtgtaggagtgctctagcggtttcagctatatgtctatgtcttc |
3017797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 835 - 930
Target Start/End: Original strand, 18187960 - 18188055
Alignment:
| Q |
835 |
agacatcagatttatttttcataggaaaaagccaaatatattttgagaaatgatcaacaaatattagatagtataagaaaccatctaaggacctaa |
930 |
Q |
| |
|
|||||||||| ||| |||||| ||| |||||||||| ||||| ||||||||||||| ||| |||| ||| || | |||||||||||| ||||||| |
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| T |
18187960 |
agacatcagacttaaatttcattggataaagccaaatgtatttggagaaatgatcaataaaaattacataataaacgaaaccatctaaagacctaa |
18188055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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