View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16671_low_2 (Length: 638)
Name: NF16671_low_2
Description: NF16671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16671_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 628
Target Start/End: Original strand, 25584468 - 25585077
Alignment:
| Q |
17 |
aagtacattgttcctgactataaaaatgactgggacatcgctggtggtatcactccattacaggtgattcaattgttatacactatcacaatttggctac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25584468 |
aagtacattgttcctgactataaaaatgactgggacatcgctggtggtgtcacgccattacaggtgattcaattgttacacactatcacaatttggctac |
25584567 |
T |
|
| Q |
117 |
attctctaaaaattggtgataaaataaattgacatactagcgtagcagttgatatgttacatgattgtcgtattcattcaaaacacaatctaaatataat |
216 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25584568 |
attctctaaaaatttgtgataaaataaattgacatgctagcgtagcagttgatatgttacatgattgtcgtattcattcaaaacacaatctaaatataat |
25584667 |
T |
|
| Q |
217 |
ttccaactctaacacacaagatgagtttttcctgattgcatgattttcttactgtacacgaaaatgatattagatattctcttcagactcgactcttctg |
316 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25584668 |
ttccaactctaacaca--agatgagtttttcctgattgcatgattttcttactgtacacgaaaatgatattagatattctcttcagactcgactcttctg |
25584765 |
T |
|
| Q |
317 |
gcaatcctatctaatgttgttctctttctcttgtttttattttcttcctgtggttggtgttgcaggtattgagtgctatccaggaactagaattggaagg |
416 |
Q |
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| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25584766 |
gtaatcctatctaatgttgttctctttctctcgtttttcttttcttcctgtggttggtgttgcaggtattgagtgctatccaggaactagaattggaagg |
25584865 |
T |
|
| Q |
417 |
nnnnnnngcagcagcagttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgacatttctgagttgtgtcattcccgtaaaattcct |
516 |
Q |
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| T |
25584866 |
aaaaaaagcagcagcagttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgacatttccgagttgtgtcattcccgtaaaattcct |
25584965 |
T |
|
| Q |
517 |
ctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctccagcaaggggctgatctaactgtacagtctactc |
616 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25584966 |
ctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctccagcaaggggctgatctaactgtacagtctactc |
25585065 |
T |
|
| Q |
617 |
acaaggttcttt |
628 |
Q |
| |
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|||||||||||| |
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| T |
25585066 |
acaaggttcttt |
25585077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 367 - 628
Target Start/End: Original strand, 25589699 - 25589960
Alignment:
| Q |
367 |
tggttggtgttgcaggtattgagtgctatccaggaactagaattggaaggnnnnnnngcagcagcagttttcatcacttcacctacttatcatggtattt |
466 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
25589699 |
tggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgttt |
25589798 |
T |
|
| Q |
467 |
gcagtaacttgagtgacatttctgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaact |
566 |
Q |
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|||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
25589799 |
gcagtaacttgagtgatatttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaact |
25589898 |
T |
|
| Q |
567 |
gcctagctcagccctccagcaaggggctgatctaactgtacagtctactcacaaggttcttt |
628 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25589899 |
gcctagctcagccctccagcaaggggctgatctaactgtacaatctactcacaaggttcttt |
25589960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 367 - 628
Target Start/End: Original strand, 25599351 - 25599612
Alignment:
| Q |
367 |
tggttggtgttgcaggtattgagtgctatccaggaactagaattggaaggnnnnnnngcagcagcagttttcatcacttcacctacttatcatggtattt |
466 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
25599351 |
tggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgttt |
25599450 |
T |
|
| Q |
467 |
gcagtaacttgagtgacatttctgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaact |
566 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
25599451 |
gcagtaacttgagtgatatttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaact |
25599550 |
T |
|
| Q |
567 |
gcctagctcagccctccagcaaggggctgatctaactgtacagtctactcacaaggttcttt |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25599551 |
gcctagctcagccctccagcaaggggctgatctaactgtacaatctactcacaaggttcttt |
25599612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 25589309 - 25589379
Alignment:
| Q |
17 |
aagtacattgttcctgactataaaaatgactgggacatcgctggtggtatcactccattacaggtgattca |
87 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
25589309 |
aagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtgattca |
25589379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 25598961 - 25599031
Alignment:
| Q |
17 |
aagtacattgttcctgactataaaaatgactgggacatcgctggtggtatcactccattacaggtgattca |
87 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
25598961 |
aagtacattattcctgactataaaaatgattgggacatcgctggtggcgtcactccattacaggtgattca |
25599031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 25589617 - 25589674
Alignment:
| Q |
284 |
tattagatattctcttcagactcgactcttctggcaatcctatctaatgttgttctct |
341 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |||||||| |||||||||||||| |
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|
| T |
25589617 |
tattagatattctcttcagattcaactcttctggtaatcctatttaatgttgttctct |
25589674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 25599269 - 25599326
Alignment:
| Q |
284 |
tattagatattctcttcagactcgactcttctggcaatcctatctaatgttgttctct |
341 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |||||||| |||||||||||||| |
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|
| T |
25599269 |
tattagatattctcttcagattcaactcttctggtaatcctatttaatgttgttctct |
25599326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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