View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16671_low_3 (Length: 458)
Name: NF16671_low_3
Description: NF16671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16671_low_3 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 52415 - 51953
Alignment:
| Q |
1 |
tggattcttggcaatggggttcttttcacttggagcagtatgctcacaataatagattactatcttattctgtttccggtaatttatctattttcctata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52415 |
tggattcttggcaatggggttcttttcacttggagcagtatgctcacaataatagattactatcttattctgtttccggtaatttatctattttcctata |
52316 |
T |
|
| Q |
101 |
cattttttaac-----------------agtgttttgaaatctcggtactcgtcctattttttgttttggaaacttgggtattcagccgtagaaggttaa |
183 |
Q |
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|||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52315 |
cattttttcagttctgatacattttttaagtgttttgaaatctcggtattcgtcctattttttgttttggaaactcgggtattcagccgtagaaggttaa |
52216 |
T |
|
| Q |
184 |
tataaagactaatcggatagggtttcacagaatacaatatatagcaccgaagtcaaggaattggcgtataaagtaacccttaagtgtccatcacaaatta |
283 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52215 |
tataaggactaatcggatagggtttcacagaatacaatacatagcaccgaagtcaaggaattggcttataaagtaacccttaagtgtccatcacaaatta |
52116 |
T |
|
| Q |
284 |
agaaattttctggaaattctcattattgtattgtttaccaacattctagattgttatgtggataatcatagagttaaaaacctagttctctctatttcaa |
383 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52115 |
agaaattttctggaaattctcaatattgtattgtttaccaacattttagattgttatgtggataatcatagagttaaaaacctagttctctctggttcaa |
52016 |
T |
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| Q |
384 |
ttttcggtgtttcaagttttaatatccaattttttgttcatttc--ctctgtgcagaattatc |
444 |
Q |
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| T |
52015 |
ttttcagtgtttcaagttttaatatccaattttttgttcatttcctctctgtgcagaattatc |
51953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 64833 - 64729
Alignment:
| Q |
5 |
ttcttggcaatggggttcttttcacttggagcagtatgctcacaataatagattactatcttattctgtttccggtaatttatctattttcctatacatt |
104 |
Q |
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||||||| |||||| ||||||| |||||| ||||||| | ||||| |||||||||| || ||| ||||||||||| |||||| |||| || |||| |
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| T |
64833 |
ttcttggaaatgggtgtcttttctcttggaacagtatgttaacaattgaagattactatgtttatctatttccggtaatgtatctactttctgatgcatt |
64734 |
T |
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| Q |
105 |
tttta |
109 |
Q |
| |
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||||| |
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| T |
64733 |
tttta |
64729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31523163 - 31523269
Alignment:
| Q |
1 |
tggattcttggcaatggggttcttttcacttggagcagtatgctcacaataatagattactatcttattctgtttccggtaatttatctattttcctata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31523163 |
tggattcttggcaatggggttcttttcacttggagcagtatgctcagaataatagattactatcttattctgtttccggtaatttatctattttctaata |
31523262 |
T |
|
| Q |
101 |
cattttt |
107 |
Q |
| |
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||||||| |
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|
| T |
31523263 |
cattttt |
31523269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 31523402 - 31523483
Alignment:
| Q |
258 |
aacccttaagtgtccatcacaaattaagaaattttctggaaattctcattattgtattgtttaccaacattctagattgtta |
339 |
Q |
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|||||| ||||| | |||||||||| |||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||| |
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| T |
31523402 |
aaccctaaagtgcctatcacaaattcagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgtta |
31523483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 31523311 - 31523390
Alignment:
| Q |
141 |
ttttttgttttggaaacttgggtattcagccgtagaagg-ttaatataaagactaatcggatagggtttcacagaatacaa |
220 |
Q |
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||||||||||||||||| | ||||||||||| ||||||| ||||| || |||||||| |||| |||||||| ||||||| |
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| T |
31523311 |
ttttttgttttggaaac-tcggtattcagccctagaaggattaatccaaggactaatcagatattgtttcacataatacaa |
31523390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 21088633 - 21088737
Alignment:
| Q |
5 |
ttcttggcaatggggttcttttcacttggagcagtatgctcacaataatagattactatcttattctgtttccggtaatttatctattttcctatacatt |
104 |
Q |
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||||||||| ||||| ||||||| |||||| |||||||||||||||| ||||||||||| || |||| |||||| ||||||||||||| || |||| |
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| T |
21088633 |
ttcttggcattgggggtcttttcgcttggaacagtatgctcacaatagtagattactatatttacttgttcccggtactttatctattttctcatgcatt |
21088732 |
T |
|
| Q |
105 |
tttta |
109 |
Q |
| |
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||||| |
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| T |
21088733 |
tttta |
21088737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 37853506 - 37853563
Alignment:
| Q |
5 |
ttcttggcaatggggttcttttcacttggagcagtatgctcacaataatagattacta |
62 |
Q |
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||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
37853506 |
ttcttggcaatggatgtcttttctcttggaacagtatgctcacaatagaagattacta |
37853563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 18095900 - 18095957
Alignment:
| Q |
5 |
ttcttggcaatggggttcttttcacttggagcagtatgctcacaataatagattacta |
62 |
Q |
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||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
18095900 |
ttcttggcaatggatgtcttttctcttggaacagtatgctcacaatagaagattacta |
18095957 |
T |
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