View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16671_low_4 (Length: 413)
Name: NF16671_low_4
Description: NF16671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16671_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 44262582 - 44262956
Alignment:
| Q |
1 |
gttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatcttcgcaagtagttat |
100 |
Q |
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| T |
44262582 |
gttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatcttcgcaagtagttat |
44262681 |
T |
|
| Q |
101 |
cgaatggataagtatagaatacatggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgctgttgttctgtttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44262682 |
cgaatggataagtatagaatacatggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgttgttgttctgtttgt |
44262781 |
T |
|
| Q |
201 |
gtagttaagcgattta---------cagcagagttttgggttcaatatagtaaggaaggagatctaaggagaggagctttggaggtttaatagcatattg |
291 |
Q |
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| T |
44262782 |
gtagttaagcgatttacagagcttgcagcagagttttgggttcaatatagtaaggaaggagatctaaggagaggagctttggaggttaaatagcatattg |
44262881 |
T |
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| Q |
292 |
gtttacaccaagtctgttggtgtgttttgctagttgtaagaataaactaattaatttagttgaggagcaccaggc |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
44262882 |
gtttacaccaagtctgttggtgtgttttgctagttgtaagaataaactaattaatttcattgaggagcacaaggc |
44262956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 125 - 321
Target Start/End: Original strand, 56165239 - 56165447
Alignment:
| Q |
125 |
ggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgctgttgttctgtttgtgtagttaagcgatttacag----- |
219 |
Q |
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|||||| |||||||||||| ||||||||||| | ||| |||| ||||| |||| ||| || ||||| |||| ||| ||||||||||| |||| |
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| T |
56165239 |
ggcctggtttcattcctaccagcattaggaccatttggattggtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagctt |
56165338 |
T |
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| Q |
220 |
----cagagttttgggttcaatatagtaaggaaggagatctaa----ggagaggagctttggaggtttaatagcatattggtttacaccaagtctgttgg |
311 |
Q |
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|||| |||||||||||||||||||||||| ||||| ||| | || ||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
56165339 |
gcagcagaattttgggttcaatatagtaaggaaagagatttaattaagaagtggaactttggaggtt-aatagcatattggtttacaccaagtctgttgg |
56165437 |
T |
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| Q |
312 |
tgtgttttgc |
321 |
Q |
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|||||||||| |
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| T |
56165438 |
tgtgttttgc |
56165447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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