View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16671_low_5 (Length: 387)

Name: NF16671_low_5
Description: NF16671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16671_low_5
NF16671_low_5
[»] chr8 (2 HSPs)
chr8 (230-380)||(12933811-12933961)
chr8 (253-290)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (230-380)||(14177081-14177231)
chr4 (230-380)||(28608644-28608794)
chr4 (238-291)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (223-260)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (223-260)||(796698-796735)
chr6 (223-260)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (223-260)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 380
Target Start/End: Original strand, 12933811 - 12933961
Alignment:
Q  230 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 328  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  329 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 380  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 12933961  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  253 catggagatttggaagaggagatttatatggagcaacc 290  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 380
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  230 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 328  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  329 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 380  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 380
Target Start/End: Complemental strand, 28608794 - 28608644
Alignment:
Q  230 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 328  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  329 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 380  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 28608644  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  238 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 291  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  223 gagcagttggatgtgaaaactgcatttcttcatggaga 260  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  223 gagcagttggatgtgaaaactgcatttcttcatggaga 260  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  223 gagcagttggatgtgaaaactgcatttcttcatggaga 260  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  223 gagcagttggatgtgaaaactgcatttcttcatggaga 260  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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