View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16671_low_6 (Length: 386)
Name: NF16671_low_6
Description: NF16671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16671_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 16409792 - 16410162
Alignment:
| Q |
18 |
ctatgtttgtattcgtactatgatttgaaaaagtgnnnnnnnnc-atctagttgttta-------aatacgaaatcttattatatttgatcaaataaaac |
109 |
Q |
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| T |
16409792 |
ctatgtttgtattcgtactatgatttgaaaaagtgttttttttccatctagttgtttaaaatttaaatacgaaatcttattatattttatcaaataaaac |
16409891 |
T |
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| Q |
110 |
aaaataccttaatcttatgcactcaaatcacgtggataaatattttcaccaaggaaagcttttgagttctatccatttagcttacctgcttaacattagt |
209 |
Q |
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| T |
16409892 |
aaaataccttaatcttatgcactcaaatcacgtggataaatattttcaccaaggaaagcttttgagttctatccatttagcttacatgcttaacattagt |
16409991 |
T |
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| Q |
210 |
ttattggagatcaatgtgtatctatactaatataaactaatgttaagcagcaaactaaatggatatttggtttgaacaaattctttacttaagtgttgat |
309 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16409992 |
ttattggagaccaatgtgtatctatactaatataaactaatgttaagaagcaaattgaatggatatttggtttgaacaaattctttacttaagtgttgat |
16410091 |
T |
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| Q |
310 |
gttggataaatggaagaaatactcttcaaaggatggcgtctgaacgaaattcttggttgagatgatgtcca |
380 |
Q |
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| T |
16410092 |
gatggataaatggaagaaatactcttcaaagggtggcgcctgaacgaaattcttggtcgagatgatgtcca |
16410162 |
T |
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