View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16672_high_1_N (Length: 359)
Name: NF16672_high_1_N
Description: NF16672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16672_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 35293625 - 35293293
Alignment:
| Q |
1 |
aagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaataataaaatggacaatcaataactattttgtaatttcgataca |
100 |
Q |
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| T |
35293625 |
aagtaacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaataataaaatgtacaattaataactattttataatttcaataca |
35293526 |
T |
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| Q |
101 |
gtaagaggctattacggctatttgttaaacattcatggatgaaaatgactataacccctttgttttatttcaaagaaaaacatgtaacgtttgtttaaaa |
200 |
Q |
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| T |
35293525 |
gtaagaggctattacggctatctattaaacattcatggatgaaaattactataatccttttattttatttcaaagaaaaatatgtgacgtttgtttaaaa |
35293426 |
T |
|
| Q |
201 |
ctattataaattatagtcatttatgtatggatgtact--ttttagtaattcaagtgcttcattgacatatgaacaacacattttgacaacatccataatc |
298 |
Q |
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| T |
35293425 |
ctattataaattatagtcatttatgtatggatgtactttttttagtaattcaagtgcttcattgacatatgaacaacacattttgacaacatccataatc |
35293326 |
T |
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| Q |
299 |
catttgattttggccaagacaaagccaccattt |
331 |
Q |
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| T |
35293325 |
catttgattttggccaagacaaagccaccattt |
35293293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 28584955 - 28585008
Alignment:
| Q |
4 |
taacttgtaattaactaaatgtaatgtaaatgcaactgaaaatatacactcaaat |
58 |
Q |
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| T |
28584955 |
taacttgtaacaaactaaatgtaatgtaaatgcaattg-aaatttacactcaaat |
28585008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 8407219 - 8407300
Alignment:
| Q |
71 |
aatcaataactattttgtaatttcgatacagtaagaggctattacggctatttgttaaacattcatggatgaaaatgactat |
152 |
Q |
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| T |
8407219 |
aatcaataactattttaaaattttgatacattcagaaactaatatggttattcgttacacatttatggatgaaaatgactat |
8407300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 2519036 - 2519076
Alignment:
| Q |
4 |
taacttgtaattaactaaatgtaatgtaaatgcaactgaaa |
44 |
Q |
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|||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
2519036 |
taacttataactaactaaatgtaatctaaatgcaactgaaa |
2519076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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