View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16673_high_2 (Length: 415)
Name: NF16673_high_2
Description: NF16673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16673_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 6128991 - 6128601
Alignment:
| Q |
8 |
attattcttcaaaagcgatatgtattgtgaaacggaagaagtacgttaaagcgtattcaaatcaagaatttcctaattctcttgtatttagaaatttttc |
107 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6128991 |
attattcttcaaaagcgacatgtattgtgaaacggaagaagtacattaaagcgtattcaaatcaagaatttcctaattctct-gtatttagaaatttttc |
6128893 |
T |
|
| Q |
108 |
caactaactcttttaaaacaaaaataaatgctaggaaaatttcaatatacctgatgaaatttgatatcctttttgcctgagcaaacgaaatgctaacgca |
207 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6128892 |
caactaactcttt-aaaacaaaaataaatgctaggaaaatttcaatatacctgatgaaatttgatatcctttttgccagagcaaacgaaatgctaacgca |
6128794 |
T |
|
| Q |
208 |
agaaagtgaaggccaccttcattagtagttatttccttattgttagtaaattttgtgtagatttgttttaatgcttcatcaatttcactttcaaaatgat |
307 |
Q |
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| T |
6128793 |
agaaagtgaaggccaccttcattagtggttatttccttattgttagtaaattttgtgtagatttgttttaatgcttcatcaatttcactttcaaaatgat |
6128694 |
T |
|
| Q |
308 |
aagatattcccaaacgatgcaatgagtcaatcaagtttagttgttgggaaacatcattcttgcaagatagaaaaatcttctttacttcttctt |
400 |
Q |
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| T |
6128693 |
aagatattcccaaacgatgcaatgagtcaatcaagtttagttgttgggaaacatcattcttgcaagatagaaaaatcttctttacttcttctt |
6128601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 158 - 387
Target Start/End: Original strand, 34450965 - 34451194
Alignment:
| Q |
158 |
ctgatgaaatttgatatcctttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagtagttatttccttattgttagtaaa |
257 |
Q |
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|||||||||| ||||||||||||| ||| |||||||||||| |||| ||||| ||||||||| |||||| || || |||||||||||||| ||||| || |
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| T |
34450965 |
ctgatgaaatgtgatatccttttttcctaagcaaacgaaattctaatgcaaggaagtgaagggaaccttcttttgtggttatttccttattcttagttaa |
34451064 |
T |
|
| Q |
258 |
ttttgtgtagatttgttttaatgcttcatcaatttcactttcaaaatgataagatattcccaaacgatgcaatgagtcaatcaagtttagttgttgggaa |
357 |
Q |
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|| ||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| ||| |
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| T |
34451065 |
attcttgtggatttgctctaatgcttcatcaatttcacgttcaaaatgataagatattcccaaacgttgcaatgagtcaatgaagtttaacttttgtgaa |
34451164 |
T |
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| Q |
358 |
acatcatt-cttgcaagatagaaaaatcttc |
387 |
Q |
| |
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| T |
34451165 |
atatcattgcttg-aagattgaaaaatcttc |
34451194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 178 - 344
Target Start/End: Original strand, 34487778 - 34487944
Alignment:
| Q |
178 |
ttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagtagttatttccttattgttagtaaattttgtgtagatttgtttta |
277 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||| ||||| || || ||||||||||||||||| ||||| | ||| |||||||| | |
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| T |
34487778 |
ttttgcctaagcaaacgaaatgctaatgcaaggaagtgaagggagccttcttttgtggttatttccttattgttggtaaaagtattgtggatttgttcca |
34487877 |
T |
|
| Q |
278 |
atgcttcatcaatttcactttcaaaatgataagatattcccaaacgatgcaatgagtcaatcaagtt |
344 |
Q |
| |
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| T |
34487878 |
atgcttcatcaatttcacgttcaaaatgataagatattcccaaacgttgcaatgagtcaatgaagtt |
34487944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 348
Target Start/End: Original strand, 34461733 - 34461927
Alignment:
| Q |
154 |
atacctgatgaaatttgatatcctttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagtagttatttccttattgttag |
253 |
Q |
| |
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|||||||| || || |||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||| | | || ||||||||||||| | |
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| T |
34461733 |
atacctgaagacatgtgatgtcctttttgcctaagcaaacgaaatactaacgcaagaaagtgaaggtcaccttcttctgaggtcatttccttattgtcac |
34461832 |
T |
|
| Q |
254 |
taaattttgtgtagatttgttttaatgcttcatcaatttcactttcaaaatgataagatattcccaaacgatgcaatgagtcaatcaagtttagt |
348 |
Q |
| |
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|||| || ||| ||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
34461833 |
taaaattgttgtgaatttgttctaacgcttcatcaatttcatgttcaaattgataagatattcccaaacgttgcaatgagtcaatgaggtttagt |
34461927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 187 - 347
Target Start/End: Original strand, 34475534 - 34475694
Alignment:
| Q |
187 |
agcaaacgaaatgctaacgcaagaaagtgaaggccaccttcattagtagttatttccttattgttagtaaattttgtgtagatttgttttaatgcttcat |
286 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||||| | || ||||||||||||||||| ||||| | ||| |||||||| |||||||||| |
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| T |
34475534 |
agcaaacgaaatgctaatgcaaggaagtgaagggaaccttcttctgtggttatttccttattgttggtaaaagtattgtggatttgttccaatgcttcat |
34475633 |
T |
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| Q |
287 |
caatttcactttcaaaatgataagatattcccaaacgatgcaatgagtcaatcaagtttag |
347 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
34475634 |
caatttcaagttcaaaatgataagatattcccaaacgttgcaatgaatcaatgaagtttag |
34475694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 1595245 - 1595312
Alignment:
| Q |
282 |
ttcatcaatttcactttcaaaatgataagatattcccaaacgatgcaatgagtcaatcaagtttagtt |
349 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||||| |
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| T |
1595245 |
ttcatcaatttcacgttcaaaatgataagatattcccaaacgttgcaatgagtcaatgatgtttagtt |
1595312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 1595126 - 1595193
Alignment:
| Q |
160 |
gatgaaatttgatatcctttttgcctgagcaaacgaaatgctaacgcaagaaagtgaaggccaccttc |
227 |
Q |
| |
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|||||||| |||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
1595126 |
gatgaaatgtgatgtcctttttgcctaagcaaacgaaatgctaatgcacaaaagtgaaggccaccttc |
1595193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 26628858 - 26628809
Alignment:
| Q |
8 |
attattcttcaaaagcgatatgtattgtgaaacggaagaagtacgttaaa |
57 |
Q |
| |
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|||||||| ||||||| | ||||||||||||||||| |||||||||||| |
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| T |
26628858 |
attattctccaaaagcaacatgtattgtgaaacggagaaagtacgttaaa |
26628809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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