View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16673_low_11 (Length: 201)
Name: NF16673_low_11
Description: NF16673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16673_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 29892951 - 29892788
Alignment:
| Q |
24 |
gtctagttagatttagttgaaaatattcatgttacttctttaaaattgttcttcgcaaaaacgaatctttgttattatttatattatgaatgttgtttta |
123 |
Q |
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| T |
29892951 |
gtctagttagatttagttgaaaatattcatgttacttctttaaaattgttcttcgcaaaaacgaatctttgttattatttatattatgaatgttgtttta |
29892852 |
T |
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| Q |
124 |
cttcttcggattgtatttgtaaaggtatatttttctttgagttaggtatattgttgaccttcct |
187 |
Q |
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| T |
29892851 |
cttcttcggattgtatttgtaaaggtatatttttctttgagttaggtatattgttgaccttcct |
29892788 |
T |
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Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 29887573 - 29887415
Alignment:
| Q |
29 |
gttagatttagttgaaaatattcatgttacttctttaaaattgttcttcgcaaaaacgaatctttgttattatttatattatgaatgttgttttacttct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||| ||| | |
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| T |
29887573 |
gttagatttagttgaaaatattcatgttacttctttaaaaaaattcttcgcaaaaatgaatcattactattatttatattatgaatgttgttttgctttt |
29887474 |
T |
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| Q |
129 |
tcggattgtatttgtaaaggtatatttttctttgagttaggtatattgttgaccttcct |
187 |
Q |
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| T |
29887473 |
ttggattgtatttgtagaggtatatttttctttgagttaggtatatttttgtccttcct |
29887415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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