View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16673_low_2 (Length: 428)
Name: NF16673_low_2
Description: NF16673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16673_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 41786935 - 41787383
Alignment:
| Q |
1 |
gaaattgtgattgggagag--gtacatactaacatttagtgtgacacacctcaaatagaatttcctccaaatggttaaagactggaaggnnnnnnnncta |
98 |
Q |
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| T |
41786935 |
gaaattgtgattgggagagaggtacatactaacatttagtgtgacacacctcaaatagaatttcctccaaatggttaaagactggaaggaaaaaaaacta |
41787034 |
T |
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| Q |
99 |
gccaagaaggagcaccaaaataggaatgagatggagggaatgaattttgtacccagagtcaactcaaatat--ggagatatagcccgttttaaatttgtc |
196 |
Q |
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| T |
41787035 |
gccaagaaggagcaccaaaataggaatgagatggagggaatgaattttgtacccagagtcaactcaaatatatggagatatagcccgttttaaatttgtc |
41787134 |
T |
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| Q |
197 |
aaagttaataatgttaaaatactagcaatttggttcatgtattagattctgcttccaatccacatctttaactgtcctatatgtactgttttaagttttc |
296 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787135 |
aaagttaataatattaaaatactagcaatttggttcatgtatttgattctgcttccaatccacatctttaactgtcctatatgtactgttttaagttttc |
41787234 |
T |
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| Q |
297 |
aatttcaag-----------------tgtttcaatttgtcttttatgttccaaaataataaatactccttttttattatgtgatgcaacaaatgagttta |
379 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41787235 |
aatttcaagtctttgtattttctatatgtttcaatttgtcttttatgttccaaaataacaaatactccttttttattatgtgatgcaacaaatgagttta |
41787334 |
T |
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| Q |
380 |
ttttggttttacttaatcgcataccttgcatataataaccatgcaacca |
428 |
Q |
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| T |
41787335 |
ttttggttttacttaatcgcataccttgcatataataaccatgcaacca |
41787383 |
T |
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