View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16673_low_5 (Length: 325)
Name: NF16673_low_5
Description: NF16673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16673_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 29892979 - 29893229
Alignment:
| Q |
1 |
cacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaagaaa |
100 |
Q |
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| T |
29892979 |
cacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaagaaa |
29893078 |
T |
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| Q |
101 |
cacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatgacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29893079 |
cacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatgatat |
29893178 |
T |
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| Q |
201 |
tgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
251 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29893179 |
tgtaatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
29893229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 29887606 - 29887856
Alignment:
| Q |
1 |
cacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttaaatccctatacaagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29887606 |
cacctgaaaatatgactatcacctcatgccaatatgttgaagagaagttaaaggaagacaagtgaaagaagtccaaactcttgaatccctatacaagaaa |
29887705 |
T |
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| Q |
101 |
cacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggttagtcgacttgggtcacacatctcttctaatttgagaaaatttgatgacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
29887706 |
tacaattagtaaaatttaaataagaaatgactaccctacaaaacaaggtgagtcgagttgggtcacatatctcttctaatatgagaaaatttgatggcat |
29887805 |
T |
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| Q |
201 |
tgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29887806 |
tgtgatgaactatgataatttaagaggaaacttatttcaattgtaccttat |
29887856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 29887942 - 29887998
Alignment:
| Q |
252 |
gtgattagaattattgaatcaaaccaacgttcatatatgtttcttcttaatcattta |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
29887942 |
gtgattagaattattgaatcaaaccaacattcatatatgtttcttcttaatccttta |
29887998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 29893968 - 29894010
Alignment:
| Q |
275 |
ccaacgttcatatatgtttcttcttaatcatttattgtctctg |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29893968 |
ccaacgttcatatatgtttcttcttaatcctttattgtctctg |
29894010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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