View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16673_low_7 (Length: 296)
Name: NF16673_low_7
Description: NF16673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16673_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 18515861 - 18515579
Alignment:
| Q |
8 |
gatgaatatccgtcctcatcctccgcccagtgctgcggatccatcggcagcggtaatcttcctccccgatgatgttatcatcgaattcctgacgtttctt |
107 |
Q |
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| T |
18515861 |
gatgaatatccttcctcatcctccgcccagtgctgcggatccatcggcagtggtaatcttcctccccgatgatgttatcatcgaattcctgacgtttctt |
18515762 |
T |
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| Q |
108 |
gaagtgaaagatctgatacgaatgaagtgcgtgtgtaagtcctggaacaccatcatctctgatccaatctttgccaaaacgcatcttaagaagaagaagc |
207 |
Q |
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| T |
18515761 |
gaagtgaaagatctgatacgaatgaagtgcgtgtgtaagtcctggaacaccatcatctctgatccaatctttgccaaaacgcatcttaagaagaagaagc |
18515662 |
T |
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| Q |
208 |
gaacaaagaaaccacatctcgcatttctctctgacaagtctgaaggttccggagattgtagagcagtacccatttctcgtttg |
290 |
Q |
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| T |
18515661 |
gaacaaagaaaccacatctcgcatttctctctgacaagtctgaaggttccggagattgtagagcagtacccatttctcgtttg |
18515579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 15572680 - 15572629
Alignment:
| Q |
240 |
gacaagtctgaaggttccggagattgtagagcagtacccatttctcgtttgt |
291 |
Q |
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| T |
15572680 |
gacaagtctgaaggttccggagattgtagggcagtaccgacctctcgtttgt |
15572629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 9807026 - 9807082
Alignment:
| Q |
118 |
atctgatacgaatgaagtgcgtgtgtaagtcctggaacaccatcatctctgatccaa |
174 |
Q |
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| T |
9807026 |
atctgatacggatgaagtgtgtgagtaagtcttggaactccctaatctctgatccaa |
9807082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 61 - 290
Target Start/End: Original strand, 14513979 - 14514205
Alignment:
| Q |
61 |
taatcttcctccccgatgatgttatcatcgaattcctgacgtttcttgaagtgaaagatctgatacgaatgaagtgcgtgtgtaagtcctggaacaccat |
160 |
Q |
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| T |
14513979 |
taatcctcctccccgacgaagttatctttgaattcctctcatttcttgaagtgaaagatctgatgtggatgaagtgcgtgtgtaagtcctggaacaccgt |
14514078 |
T |
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| Q |
161 |
catctctgatccaatctttgccaaaacgcatcttaagaagaagaagcgaacaaagaaaccacatctcgcatttctctctgacaagtctgaaggttccgga |
260 |
Q |
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| T |
14514079 |
catctctgatccaatcttcgccaaaatgcatcttaagaagaagaag---aagaagaagcaacacctcacacttctctctgacaagtccaaaggttccgga |
14514175 |
T |
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| Q |
261 |
gattgtagagcagtacccatttctcgtttg |
290 |
Q |
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| T |
14514176 |
gattgtagagctgtacccatctctcgtttg |
14514205 |
T |
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