View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16674_high_2 (Length: 348)
Name: NF16674_high_2
Description: NF16674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16674_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 34865431 - 34865750
Alignment:
| Q |
12 |
agcacagacactacggaatcgaagaacatcaaatggattcaaattcatggatataataactaaccataattctcgaggaagatttagccagtcaactgcg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34865431 |
agcacagacactacggaatcgaagaacatcaaatggattcaaattcttggatataataactaaccataattctcgaggaagatttagccagtcaactgcg |
34865530 |
T |
|
| Q |
112 |
tcatcatccatcatcacacactttttcttcaagtctccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatata |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34865531 |
tcatcatccatcatcacacactttttcttcaagtctccgtcaccagtccctgctgccactctgcccgttcttttcttttataataatttatatttatata |
34865630 |
T |
|
| Q |
212 |
taaggaatccgtgagatatttttgcgtaacattgaatacaccatgaaaatcatacgatttcaatagcctgcaccaaaatgaaaattatttaaaaaattaa |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34865631 |
taaggaatccatgagatatttttgcgtaacattgaatacaccatgaaaatcatatgatttcaatagcctgcaccaaaatgaaaattatttaaaaaattaa |
34865730 |
T |
|
| Q |
312 |
atgatttctatcatcttcat |
331 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34865731 |
atgatttctatcatcttcat |
34865750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 59 - 274
Target Start/End: Complemental strand, 51858077 - 51857864
Alignment:
| Q |
59 |
tggatataataactaaccataattctcgaggaagatttagccagtcaactgcgtcatcatccatcatcacacactttttcttcaagtctccgtcaccagt |
158 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||| |||||||||||| |||||||||||||||| || | || |
|
|
| T |
51858077 |
tggatataataactaaccataagtctcgaggaagatttagccaatcaaccgtgtcatcatctatcatcacacacactttcttcaagtctccg-catctgt |
51857979 |
T |
|
| Q |
159 |
ccctgctgccactctgcccgttcttttc--ttttataataatttatatttatatataaggaatccgtgagata-tttttgcgtaacattgaatacaccat |
255 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||| | |||||||||||| ||| | |||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
51857978 |
tcctgctgctactctgcccattcttttcttttttttgataatttatatt----tatgaagaatccacgagatattttttgcataacattgaatacaccat |
51857883 |
T |
|
| Q |
256 |
gaaaatcatacgatttcaa |
274 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
51857882 |
gaaaatcatacgatttcaa |
51857864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University