View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16674_low_1 (Length: 488)
Name: NF16674_low_1
Description: NF16674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16674_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Complemental strand, 27448800 - 27448336
Alignment:
| Q |
15 |
ctagcaacctgaggagtaaaactcctgtgccattcagtatcaagtattttgtccaaatgtatcccatcatcgaagattactgtagagattcttgcagctt |
114 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27448800 |
ctagcgacatgaggagtaaaactcctgtgccattcagtatcaagtattttgtccaaatgtatcccatcatcgaagatcactgtagagattcttgcagctt |
27448701 |
T |
|
| Q |
115 |
tgaagcatgttgaactaatagattctaatcctgagattcttctgtattcttcaacagcttccaaagttggctcgcatccatacaacgcagcaacatctct |
214 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27448700 |
tgaagcatgttgaactaacagattctaatcctgaaattcttctgtattcttcaacagcttccaaagttggctcgcatccatacaactcagcaacatctct |
27448601 |
T |
|
| Q |
215 |
tagatttctctgccatcacaaaaataaccaatcgattatttttagatatttccttagaagtaaacaaagcatagaatgttttttaccttgaaggatagag |
314 |
Q |
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| T |
27448600 |
tagatttctctgccatcacaaaaataaccaatcaatt-tttttagatatttccttagaagtaaacaaagcatagaatgttttttaccttgaaggatagag |
27448502 |
T |
|
| Q |
315 |
agtattgtgttgaagcaacagcatcaccatgtgctagagaaaaagcatgaatcaaagaaaagttggagtcaagcgcaactaagttatgggcatgaccatc |
414 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
27448501 |
agtattgtgttgaagcaacagcatcaccatgcgctaatgaaaaagcatgaatcaaagaaaagtttgagtcaaccgcaactaagttatgggcatgaccatc |
27448402 |
T |
|
| Q |
415 |
cacaagttccacagactcaatcgtttttctcaatacactgaaatccattctcactctgttcatctc |
480 |
Q |
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| T |
27448401 |
cacaagttccacagactcaatcgtttttctcaatacactgaaatccattctcactctgttcgtctc |
27448336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 423
Target Start/End: Complemental strand, 27423254 - 27423130
Alignment:
| Q |
299 |
accttgaaggatagagagtattgtgttgaagcaacagcatcaccatgtgctagagaaaaagcatgaatcaaagaaaagttggagtcaagcgcaactaagt |
398 |
Q |
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||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||| | |||||| |||| |||||||| | ||| | ||||| || |
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| T |
27423254 |
accttgaaggatagagagtgttgtgaagaagcaagagcatcaccatgtgcttcagaaaaggaatgaataaaaggcaagttggattgaagagaaactatgt |
27423155 |
T |
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| Q |
399 |
tatgggcatgaccatccacaagttc |
423 |
Q |
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| T |
27423154 |
tgtgggcatgaccatccacaagttc |
27423130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 299 - 423
Target Start/End: Complemental strand, 27401155 - 27401031
Alignment:
| Q |
299 |
accttgaaggatagagagtattgtgttgaagcaacagcatcaccatgtgctagagaaaaagcatgaatcaaagaaaagttggagtcaagcgcaactaagt |
398 |
Q |
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||||||||||||||||||| ||||| ||||||| ||||||||| || ||| |||||| |||||||| || | |||||||| | ||| | ||||| || |
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| T |
27401155 |
accttgaaggatagagagtgttgtgaagaagcaagagcatcaccttgagcttcagaaaaggcatgaataaagggcaagttggattgaagagaaactatgt |
27401056 |
T |
|
| Q |
399 |
tatgggcatgaccatccacaagttc |
423 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
27401055 |
tgtgggcatgaccatccacaagttc |
27401031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 226
Target Start/End: Complemental strand, 27403087 - 27402893
Alignment:
| Q |
32 |
aaaactcctgtgccattcagtatcaagtattttgtccaaatgtatcccatcatcgaagattactgtagagattcttgcagctttgaagcatgttgaac-t |
130 |
Q |
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||||||| | |||||||| ||||| | ||||||||||| | | ||||||||| | || || | ||||||||||||||||||||| |||||||||| | |
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| T |
27403087 |
aaaactcttatgccattctatatcatgcattttgtccaattcaaacccatcatccatgagtatagcagagattcttgcagctttgaaacatgttgaacat |
27402988 |
T |
|
| Q |
131 |
aatagattctaatcctgagattcttctgtattcttcaacagcttccaaagttggctcgcatccatacaacgcagcaacatctcttagatttctctg |
226 |
Q |
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| T |
27402987 |
gaca-attccaatccagagacttttcggtgttcttcaacaccttgcaaagataactcacatccatatagctcagctaaatcccttagatttctctg |
27402893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 27424105 - 27424007
Alignment:
| Q |
31 |
taaaactcctgtgccattcagtatcaagtattttgtccaaatgtatcccatcatcgaagattactgtagagattcttgcagctttgaagcatgttgaac |
129 |
Q |
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|||||||| | |||||||| ||||| ||||||||||| | || ||||||||| | || || | ||||||||||||||||||||| |||||||||| |
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| T |
27424105 |
taaaactcttatgccattctatatcatacattttgtccaattctaacccatcatccatgagtatagcagagattcttgcagctttgaaacatgttgaac |
27424007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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