View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16674_low_3 (Length: 290)
Name: NF16674_low_3
Description: NF16674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16674_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 37232421 - 37232691
Alignment:
| Q |
1 |
tacataattcaggtgatattattaacacattaaaagcatcaattttcaatgatgtttcattaatttgagtactgtttgcagagaaagaactgatgacctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37232421 |
tacataattcaggtgatattattaacacattaaaagtatcaattttcaatgatgtttcattaatttgagtactttttgcagagaaagaactgatgacctt |
37232520 |
T |
|
| Q |
101 |
gtctagaaggatgaaaattgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatatccatcgtgacataaaatcagat |
200 |
Q |
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| T |
37232521 |
gtctagaaggatgaaaattgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatatccatcgtgacataaaatcagat |
37232620 |
T |
|
| Q |
201 |
aatattttattaaataaaaacttcaatgggaagttataattctatgccgcttttgttaaagctacttaata |
271 |
Q |
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| T |
37232621 |
aatattttattaaataaaaacttcaatgggaaggtataatactatgcctcttttgttaaagcttcttaata |
37232691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 37223528 - 37223704
Alignment:
| Q |
49 |
atgatgtttcattaatttgagtactgtttgcagagaaagaactgatgaccttgtctagaaggatgaaaattgctctggatgtagcaagaggccttgagta |
148 |
Q |
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| T |
37223528 |
atgatgtttcattgatttgaataccatttgcagagaaagaaccgataacgttgtctacaaggatgaaaattgccctggatgttgcgagaggccttgagta |
37223627 |
T |
|
| Q |
149 |
tattcatgatcattcggtgcctgtatatatccatcgtgacataaaatcagataatattttattaaataaaaacttca |
225 |
Q |
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| T |
37223628 |
tattcatgatcattccattcctgtatatatccatcgtgacataaaatcagataatattctgttaaatgaaaacttca |
37223704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 37217828 - 37218017
Alignment:
| Q |
49 |
atgatgtttcattaatttgagtactgtttgcagagaaagaactgatgaccttgtctagaaggatgaaaattgctctggatgtagcaagaggccttgagta |
148 |
Q |
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||||||||| ||| |||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||| || || || || ||||| |
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| T |
37217828 |
atgatgtttaattgatttgaatactgtttgcagagaaagaaccgatgacgttgtctacaaggatgaaaattgccctggatgttgcgaggggtctagagta |
37217927 |
T |
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| Q |
149 |
tattcatgatcattcggtgcctgtatatatccatcgtgacataaaatcagataatattttattaaataaaaacttcaatgggaagttata |
238 |
Q |
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| T |
37217928 |
tattcatgatcattccgttcccgtatatatccatcgcgacataaaatcagataatattttgttaaatgaaaacttcactggcaaggtata |
37218017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 37385428 - 37385267
Alignment:
| Q |
79 |
cagagaaagaactgatgaccttgtctagaaggatgaaaattgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatat |
178 |
Q |
| |
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|||||| || || |||||| | ||||| |||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||| || |
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| T |
37385428 |
cagagagaggaccgatgacgtggtctaccaggatgcaaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcctgtatacat |
37385329 |
T |
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| Q |
179 |
ccatcgtgacataaaatcagataatattttattaaataaaaacttcaatgggaagttataat |
240 |
Q |
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|||||| ||||| |||||||||||||||||||||||| ||||||| | ||||||| |||||| |
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| T |
37385328 |
ccatcgcgacatcaaatcagataatattttattaaatgaaaactttactgggaaggtataat |
37385267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 37203451 - 37203562
Alignment:
| Q |
101 |
gtctagaaggatgaaaattgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatatccatcgtgacataaaatcagat |
200 |
Q |
| |
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||||| ||||||| ||||||| |||||| ||| ||||| ||||| ||||||||||| ||| | || ||||||||||||||||| || ||||| || || |
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| T |
37203451 |
gtctacaaggatgcaaattgcgctggattcagccagaggtcttgaatatattcatgaacatacagtacctgtatatatccatcgcgatataaagtcggag |
37203550 |
T |
|
| Q |
201 |
aatattttatta |
212 |
Q |
| |
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|| ||||||||| |
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| T |
37203551 |
aacattttatta |
37203562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 37315683 - 37315766
Alignment:
| Q |
115 |
aaattgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatatccatcgtgacataaaatcag |
198 |
Q |
| |
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|||||||||| ||| ||||||||||||||| || |||||||| ||| | |||||| | |||||||||||||| ||||||||| |
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| T |
37315683 |
aaattgctctagattcagcaagaggccttgaatacattcatgaacatactgtgcctatgtatatccatcgtgatgtaaaatcag |
37315766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 37198481 - 37198591
Alignment:
| Q |
114 |
aaaattgctctggatgtagcaagaggccttgagtatattcatgatcattcggtgcctgtatatatccatcgtgacataaaatcagataatattttattaa |
213 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||| || ||||| || ||| | || ||| |||||| ||||| |||||||| ||||| |||||| ||||| |
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| T |
37198481 |
aaaattgctctggattcagccagaggtcttgaatacattcacgaacataccgtccctacatatattcatcgcgacataaagtcagaaaatattctattag |
37198580 |
T |
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| Q |
214 |
ataaaaacttc |
224 |
Q |
| |
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| T |
37198581 |
acaaaaacttc |
37198591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 36199562 - 36199620
Alignment:
| Q |
135 |
agaggccttgagtatattcatgatcattcggtgcctgtatatatccatcgtgacataaa |
193 |
Q |
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||||| ||||| ||||| ||||| ||| | |||||||||||||| |||||||||||||| |
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| T |
36199562 |
agaggtcttgaatatatccatgagcatacagtgcctgtatatattcatcgtgacataaa |
36199620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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